Interestingly, my system is 64bit. However, I've seen the update-
notifier icon like usual once or twice now. However, thats not to say
something isn't off still. If I do apt-get update and the update-
notifier shows up grayed out, why doesn't it appear orange immediately
afterwards to show me updates are available when it knows updates are
available?

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update-manager no longer shows up in systray when updates are available in 
Xubuntu
https://bugs.launchpad.net/bugs/551888
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