I am running Lucid and have the OpenJDK installed but not the Sun JDK.
I was getting the problem of not being able to update Eclipse.  I now
use a launch script of:

    #! /bin/sh

    export GDK_NATIVE_WINDOWS=1
    $HOME/eclipse-x86_64/eclipse -vmargs -Djava.net.preferIPv4Stack=true

and updates work fine. so this would seem to confirm that the issue is
as hypothesized.

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eclipse unable to 'install new software'
https://bugs.launchpad.net/bugs/541482
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