yes sorry i should have said that i have done a clean install in the
past.   This build is from a clean install.  I have been backwards and
forwards from 9.04 to 9.10 a few times 4 months trying to fix various
and numerous anoyances and bugs.

I just booted up into a live image which has 2.6.31-14 kernel.  It
reboots no problem so that good.  I still have that kernel on the system
so i booted up into that from grub but have the same reboot issue.

So it's to do with a package in my system that is not in the live
distro?

I suspect that this might be to do with HAL not shutting down properly
but not sure how to move forward on that.

Also, on each boot i get a message on the splash screen saying that one
or more mounts in fstab could not be mounted, usually my /home, it then
just boots up anyway and is fine.  I have fsck'd /home and it's fine.

I dont think that is related but maybe worth mentioning.

-- 
[Karmic] Hangs during shutdown with kernel 2.6.31-7
https://bugs.launchpad.net/bugs/418509
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