I had very similar problem today while converting video files. I used this 
command 'mencoder -oac mp3lame -ovc xvid -vf scale=320:240 -ofps 20 
-xvidencopts bitrate=300 -o out.avi vvideo.avi'. Since there was an error 
(double 'v' in the input file name) encoding failed. But when I was trying to 
correct this mistake moved the cursor to the position of the first 'v' and 
pressed Delete some other characters appeared on the place of 'v'. When I 
corrected it to the right name 'video.avi' and pressed Enter to run command 
mencoder failed again. Again with the bad name of input file but this time with 
'idveo.avi'. No matter that there was 'video.avi' in the line before pressing 
Enter. In other words there where two different strings in the input buffer of 
bash and on the screen. This problem repeated again and again. But when I try 
it now (a couple of hours later) it works very well. I can't understand what 
happened.
I wanted to attach ~/.bash_history file here but I have just realised that it 
is empty owned by root and has the modification time 2010-03-04 21:01 (the time 
in the output of ls -la command)! May it be somehow connected with my problem?

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bash doesn't recognise commands correctly
https://bugs.launchpad.net/bugs/498188
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