My IBM Thinkpad R50p is affected as well. I was running SuSe and FC4
before and had no problems with shutdowns due to high temperatures. I do
not remember, which kernel version I used, but I installed the kernel
sources from 2.6.17 (with ubuntu patches) and recognized, that the
ibm_acpi.c driver is outdated (compared to the driver in 2.6.20.1)

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laptop overheats when performing CPU intensive tasks.
https://launchpad.net/bugs/22336

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