In some of the releases since this bug-report (I am using module-init-
tools 3.7-pre9 now) this was adjusted so that the tool warns about files
that do not have .conf file ending and it also ignores .svn files now.
So this is actually fixed since some time now.
** Changed in: module-init-tools (Ubuntu)
Status: Triaged => Fix Released
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ugly WARNINGs when running depmod with version-controlled /etc
https://bugs.launchpad.net/bugs/326586
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