Do you have any FAT32-partitions?

It seems, that fsck always checks FAT32-partitions, even though it may
show it was checking your root and/or home partition.

Try editing your fstab and change the two numbers at the end of the
FAT32 entries (probably 0 and 1) to 0 for both.

This will cause the partitions not to be checked on startup, so don't do
it, if you have anything important stored on your FAT32-partiton(s).
Alternatively you can try this with all the other drives, one at a time,
to see which one is really checked.

-- 
Edgy Beta -- fsck on every (re)boot
https://launchpad.net/bugs/63175

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