I have a related problem. Using a Thinkpad X200s with an LVDWS/WSXGA screen at 
1440x900 @ 50 Hz,
I encounter problems after having used an external display with another 
resolution.  The laptop screen goes black and sometimes returns to a catatonic 
state, even after reboot.  The only solution I have found sofar is to boot my 
xubuntu 9.04 in recovery mode and then reinstall xserver-xorg, which seems like 
an overkill.

The output from xrandr (when on the laptop screen);


 Screen 0: minimum 320 x 200, current 1440 x 900, maximum 1440 x 1440
 VGA disconnected (normal left inverted right x axis y axis)
 LVDS connected 1440x900+0+0 (normal left inverted right x axis y axis) 261mm x 
163mm
    1440x900       50.0*+   59.9     50.0* 
    1360x768       59.8  
    1152x864      100.0     85.1     85.0     75.0     75.0     70.0     60.0  
    1024x768       85.0     75.0     70.1     60.0  
    832x624        74.6  
    800x600        85.1     72.2     75.0     60.3     56.2  
    640x480        85.0     72.8     75.0     59.9  
    720x400        85.0  
    640x400        85.1  
    640x350        85.1  
 HDMI-1 disconnected (normal left inverted right x axis y axis) 
 HDMI-2 disconnected (normal left inverted right x axis y axis)


Output from ddcprobe:

 vbe: VESA 3.0 detected.
 oem: Intel(r)Cantiga Graphics Chip Accelerated VGA BIOS
 vendor: Intel Corporation
 product: Intel(r)Cantiga Graphics Controller Hardware Version 0.0
 memory: 32704kb
 mode: 1280x1024x256
 mode: 1280x1024x64k
 mode: 1280x1024x16m
 mode: 1024x768x256
 mode: 1024x768x64k
 mode: 1024x768x16m
 mode: 640x480x16m
 mode: 800x600x64k
 mode: 800x600x16m
 mode: 640x480x256
 mode: 800x600x256
 mode: 640x480x64k
 edid: 
 edid: 1 3
 id: 4014
 eisa: LEN4014
 serial: 00000000
 manufacture: 38 2008
 input: analog signal.
 screensize: 26 16
 gamma: 2.200000
 dpms: RGB, active off, suspend, standby
 dtiming: 1440x...@50
 dtiming: 1440x...@50
 monitorid: LTD121EQ3B


Output from lspci -nn | grep VGA:
 
00:02.0 VGA compatible controller [0300]: Intel Corporation Mobile 4 Series 
Chipset Integrated Graphics Controller [8086:2a42] (rev 07)


Content of /etc/X11/xorg.conf:

 Section "Device"
         Identifier      "Configured Video Device"
 EndSection
 
 Section "Monitor"
         Identifier      "Configured Monitor"
 EndSection
 
 Section "Screen"
         Identifier      "Default Screen"
         Monitor         "Configured Monitor"
         Device          "Configured Video Device"
 EndSection

-- 
screen resolution resets xubuntu 9.04
https://bugs.launchpad.net/bugs/380082
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