I went through your suggested checklist, and found this:
1) The partition is mounted r/w, and I have permission to edit files and 
folders on it.
2) mutagen-inspect shows that the files are being modified
3) Running quodlib in at debug level 1 reported nothing that seemed at all 
helpful, which is curious considering that the error still shows. I have 
attached the relevant part of the log.
Even stranger, this was occurring on a file that it is not happening to now, 
but still happening to other files.

** Attachment added: "quodlog"
   http://launchpadlibrarian.net/29799292/quodlog

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Quod Libet errors when working with files on mounted NTFS partition
https://bugs.launchpad.net/bugs/405206
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