It appears as if part of the system thinks the screen is only 1680x1050
big.

Here is for example the ouput of synergy client:

INFO: synergyc.cpp,716: Synergy client 1.3.1 on Linux 2.6.28-13-generic 
#45-Ubuntu SMP Tue Jun 30 22:12:12 UTC 2009 x86_64
DEBUG: CXWindowsScreen.cpp,847: XOpenDisplay(":0.0")
DEBUG: CXWindowsScreenSaver.cpp,339: xscreensaver window: 0x00000000
DEBUG: CXWindowsScreen.cpp,117: screen shape: 0,0 1680x1050 (xinerama)
DEBUG: CXWindowsScreen.cpp,118: window is 0x03600004
DEBUG: CScreen.cpp,38: opened display
NOTE: synergyc.cpp,330: started client

Then it works also on the mentioned part of the screen.

** Changed in: ubuntu
       Status: Incomplete => New

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desktop missing a part of screen
https://bugs.launchpad.net/bugs/399745
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