I had the same problem. I used up pretty much of my space and saw that
in /var/cache I had like 600MB so I did rm -rf /var/cache/* right after
that apt-get and Synaptic returned errors when you would try to use
them.

I searched in Google and of course many other folks have had the same
issue which is fixed with mkdir -p /var/cache/apt/archives/partial. I do
think this is an issue that have happened to many people and will happen
in the future and it costs nothing to be fixed and not to couse an error
when you have deleted all your /var/chache.

Kind regards!

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apt stops working if /var/cache erased
https://bugs.launchpad.net/bugs/18391
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