@Zygmunt: You can run:
echo 3 > /proc/sys/vm/drop_caches 

to get a cold disk cache again.  On my (relatively new) system the time after 
that is:
$ time /usr/lib/command-not-found foobar
real    0m1.851s
user    0m0.208s
sys     0m0.144s

-- 
command-not-found should print something on the console immediately
https://bugs.launchpad.net/bugs/335231
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