I dunno exactly what caused the problem, a reinstall solved it, however
it might be a good idea that the process be patched in some way that
would halt itself if stuck looping like this for too long to prevent
hardware failure as an unattended system could be damaged by
overheating.

I will leave it up to the admins to close the bug as it is no longer
affecting me.

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Process gconfd-2 causes cpu overuse and overheat
https://bugs.launchpad.net/bugs/390733
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