Well, in fact I think it is "trivial to fix", it is just a question on
whether we want users being able to install easily whatever they want or
not.

I think it'd be easy to just pop a dialog informing the user on this
matter and the possible security issues, and allowing him to decide
whether to give permissions to the file or not. Once he is informed,
it's up to him to do it or not. But keeping it difficult for newcomers
so that they forget about installing it this way is a bad idea, in my
opinion... they have always done it in their previous OS, and not being
able to do it in Ubuntu will be a negative point in their mind.

So the way, in my opinion, is: make it easy, but educating the user.

-- 
Non-executable files with common executable extensions (.bin, .sh) should be 
easier for users to run
https://bugs.launchpad.net/bugs/389465
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