I ran into this same system similar after upgrading to Jaunty on a
system that uses autofs and network-manager. The problem was that
network-manager by default does not share the connection, so when the
user logged out, networking stopped and any network filesystems that
were mounted when the user logged out would cause shutdown to hang. The
workaround was to check 'Available to all users' for the network
connection in network-manager.

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Jaunty & Interpid: won't power off on shutdown or reboot
https://bugs.launchpad.net/bugs/326988
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