After fresh install of 9.04 on clean disk and using 
sudo top
100% cpu is reported for Synaptic for a couple of minutes after marking a 
number of packages to be installed and when installation completed. Problem 
remains after all updates have been installed and machine restarted. This does 
not happen every time packages are selected or installed. It looks like a 
problem that arises when the list of packages is refreshed.

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working with synaptic results cpu 100%
https://bugs.launchpad.net/bugs/218213
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