I am now pretty certain this has to do with the kernel as the comments
in the below bug report reflect exactly my epxeriences after a fresh
install of Jaunty 64-bit:

jaunty kernel 2.6.28-11 kernel update renders the system un-usable
https://bugs.launchpad.net/ubuntu/+source/linux/+bug/346691

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[Jaunty beta] many ext4-fs errors
https://bugs.launchpad.net/bugs/350268
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