On dapper (6.06.1 LTS) the method outlined in the previous comment can also be 
used.
However the file to be modified is /etc/mkinitramfs/modules

Here is the procedure when using the Alternate CD
After the install has completed and ejected the CD
#chroot /target
#mount /boot
edit /etc/mkinitramfs/modules or /etc/initramfs-tools/modules and add a line 
containing "aic94xx"
#update-initramfs -u -k all

-- 
At boot doesn't recognize aic9405 controller sas/sata
https://launchpad.net/bugs/46510

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