This is a broadcom chip, and appears to be controlled by the tg3 driver.
This sounds like it could be related to the upstream commit below:

  commit 0a459aac9d151c2e36ec65723b9b845b24c5cbc3
  Author: Matt Carlson <mcarl...@broadcom.com>
  Date:   Mon Nov 3 16:54:15 2008 -0800

    tg3: Allow WOL for phylib controlled Broadcom phys
    
    This patch allows WOL to be enabled for Broadcom phys under phylib
    control.  The only exception is the AC131, which has a completely
    different register set.
    
    Signed-off-by: Matt Carlson <mcarl...@broadcom.com>
    Signed-off-by: Michael Chan <mc...@broadcom.com>
    Signed-off-by: David S. Miller <da...@davemloft.net>

I have back ported this fix to the latest Intrepid and jaunty kernels.
I have built some test kernels with this patch applied.  Could you test
these kernels and report back here.  When reporting please indicate
which kernels you have tested.  The kernels are at the URLs below:

    http://people.ubuntu.com/~apw/lp162201-intrepid/
    http://people.ubuntu.com/~apw/lp162201-jaunty/

** Changed in: linux (Ubuntu)
       Status: Triaged => In Progress

** Changed in: linux (Ubuntu)
     Assignee: (unassigned) => Andy Whitcroft (apw)

** Changed in: linux (Ubuntu)
       Status: In Progress => Incomplete

-- 
shutdown power off ethernet disabling WOL
https://bugs.launchpad.net/bugs/162201
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