It may be an issue with compiz that was fixed recently, where compiz
introduced a regression with the way focus_on_map was dealt with with
respect to focus stealing. See
https://bugs.launchpad.net/ubuntu/+source/compiz/+bug/333284

Can you try the latest version of compiz a confirm if you can still
reproduce the issue? Thanks

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new nautilus window stays in background
https://bugs.launchpad.net/bugs/333366
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