I have got a similar issue with pinning with amd64 intrepid kde3 repos.

http://ppa.launchpad.net/kb9vqf/

This is the sources.list.d file:

deb http://ppa.launchpad.net/kb9vqf/ubuntu intrepid main
deb-src http://ppa.launchpad.net/kb9vqf/ubuntu intrepid main


Both the main Release file and the component Release file both list correctly 
LP-PPA-kb9vqf as its origin:

http://ppa.launchpad.net/kb9vqf/ubuntu/dists/intrepid/Release
http://ppa.launchpad.net/kb9vqf/ubuntu/dists/intrepid/main/binary-amd64/Release

But if I make a pin like that:

Package: *
Pin: release o=LP-PPA-kb9vqf
Pin-Priority: -20

My system version: (ubuntu 64bit intrepid)
remedios /etc/apt/sources.list.d # dpkg -l dpkg apt
Desired=Unknown/Install/Remove/Purge/Hold
| Status=Not/Inst/Cfg-files/Unpacked/Failed-cfg/Half-inst/trig-aWait/Trig-pend
|/ Err?=(none)/Hold/Reinst-required/X=both-problems (Status,Err: uppercase=bad)
||/ Name           Version        Description
+++-==============-==============-============================================
ii  apt            0.7.14ubuntu6  Advanced front-end for dpkg
ii  dpkg           1.14.20ubuntu6 Debian package management system

-- 
Allow pinning based on individual PPA repository
https://bugs.launchpad.net/bugs/270817
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