The problem appears to be that during suspend the Interrupt for the
Nvidia MCP78S (PCI 00:09.0) isn't being disabled, nor re-enabled on
resume (other AHCI-managed controllers are - see 07.00.0).

Start-up:

[    1.364523] ahci 0000:00:09.0: version 3.0

[    1.364948] ahci 0000:00:09.0: PCI INT A -> Link[LSA0] -> GSI 23 (level, 
low) -> IRQ 23
[    1.364978] ahci 0000:00:09.0: irq 2299 for MSI/MSI-X
[    1.365029] ahci 0000:00:09.0: AHCI 0001.0200 32 slots 6 ports 3 Gbps 0x3f 
impl IDE mode
[    1.365034] ahci 0000:00:09.0: flags: 64bit ncq sntf led clo pmp pio 
[    1.365037] ahci 0000:00:09.0: setting latency timer to 64
[    1.365410] scsi0 : ahci

[    1.366024] ata1: SATA max UDMA/133 abar m8...@0xf8c76000 port
0xf8c76100 irq 2299

[    1.848080] ata1: SATA link up 1.5 Gbps (SStatus 113 SControl 300)
[    1.892134] ata1.00: ATA-7: ST3320620AS, 3.AAE, max UDMA/133
[    1.892139] ata1.00: 625142448 sectors, multi 16: LBA48 NCQ (depth 31/32)
[    1.950480] ata1.00: configured for UDMA/133

[    3.548102] scsi 0:0:0:0: Direct-Access     ATA      ST3320620AS      3.AA 
PQ: 0 ANSI: 5
[    3.548237] sd 0:0:0:0: [sda] 625142448 512-byte hardware sectors: (320 
GB/298 GiB)

[    3.565485] sd 0:0:0:0: [sda] Attached SCSI disk

Suspend...

[  336.957742] sd 0:0:0:0: [sda] Synchronizing SCSI cache
[  336.957774] sd 0:0:0:0: [sda] Stopping disk

Resume...

[  339.324028] ahci 0000:00:09.0: restoring config space at offset 0x1 (was 
0xb00107, writing 0xb00507)
[  339.324043] ahci 0000:00:09.0: setting latency timer to 64

[  340.081785] sd 0:0:0:0: [sda] Starting disk

[  348.512019] ata1.00: qc timeout (cmd 0xec)
[  348.512021] ata1.00: failed to IDENTIFY (I/O error, err_mask=0x4)

-- 
[MSI MS-7374] suspend/resume failure [non-free: nvidia]
https://bugs.launchpad.net/bugs/334644
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