I've tried using Jaunty Alpha 4 and the bug is still there, as far as I
can tell it only happens with automounting and only when writing, not
when reading, I've performed some non-scientific experiments to help
find the problem and its characteristics, you can find the results below
and the log files requested attached.

Copying a 147 MB file from the PC(NTFS partition) to a 4GB USB
drive(FAT32 partition):

Windows, copied using the GUI, stopwatch timing: 15s
Windows, copied using the cmdline(via copy), automatic timing(via wtime.exe): 
13.8s

Jaunty Alpha 4, mounted automatically, copied using nautilus, stopwatch timing: 
31s
Jaunty Alpha 4, mounted automatically, copied using terminal(cp), automatic 
timing(via time): 25.8s
Jaunty Alpha 4, mounted automatically, copied using terminal(dd), automatic 
timing(via dd): 26.1s, reported speed at end (5.9 MB/s)

Jaunty Alpha 4, mounted manually, copied using nautilus, stopwatch timing: 15s
Jaunty Alpha 4, mounted manually, copied using terminal(cp), automatic 
timing(via time): 16s
Jaunty Alpha 4, mounted manually, copied using terminal(dd), automatic 
timing(via dd): 16.1s, reported speed at end (9.5 MB/s)

Copying a 147 MB file from a USB drive(FAT32 partition) to the PC(NTFS
partition):

Windows, copied using the GUI, stopwatch timing: 6.6s
Windows, copied using the cmdline(via copy), automatic timing(via wtime.exe): 
6.8s

Jaunty Alpha 4, mounted automatically, copied using nautilus, stopwatch timing: 
8s
Jaunty Alpha 4, mounted automatically, copied using terminal(cp), automatic 
timing(via time): 2.6s
Jaunty Alpha 4, mounted automatically, copied using terminal(dd), automatic 
timing(via dd): 18.8s, reported speed at end (8.2 MB/s)

Jaunty Alpha 4, mounted manually, copied using nautilus, stopwatch timing: 6.5s
Jaunty Alpha 4, mounted manually, copied using terminal(cp), automatic 
timing(via time): 2.5s
Jaunty Alpha 4, mounted manually, copied using terminal(dd), automatic 
timing(via dd): 17.9s, reported speed at end (8.6 MB/s)

** Attachment added: "lspci-vvnn.log"
   http://launchpadlibrarian.net/23221040/lspci-vvnn.log

-- 
[jaunty] usb file transfer is very very slow
https://bugs.launchpad.net/bugs/334914
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