ghee22, please try the included patch with a fresh source. That is,
after extracting xf86-input-fujitouch-0.6.5.tar.bz2, download the
attachment into xf86-input-fujitouch-0.6.5 directory. In that directory,
do the following:

  patch -p0 < fujitouch.diff

Then run configure, make, sudo make install as usual
About xorg.conf, you may have to create one as jaunty by default doesn't come 
with one. There are some instructions in 
http://www5.atpages.jp/~syockit/wordpress/ but they're in Japanese. Scroll down 
to xorg.conf and see the commands there.

** Attachment added: "Patch against xf86-input-fujitouch-0.6.5 for jaunty's 
newer xorg"
   http://launchpadlibrarian.net/21635770/fujitouch.diff

-- 
add support for fujitsu tablet input device
https://bugs.launchpad.net/bugs/134401
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