I was experiencing exactly the same issue, which I reported there:

https://launchpad.net/distros/ubuntu/+source/update-manager/+bug/52668/

In the end I marked my bug report as a duplicate of:

https://launchpad.net/distros/ubuntu/+source/nvidia-glx/+bug/49834

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crashes when one of the resources is not available
https://launchpad.net/bugs/52658

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