I tested wakealarm with changed BIOS setting. I set PowerUp method to 
"Everyday" instead of "ByDate". Then applied same procedure:
$ sudo sh -c 'echo 0 > /sys/class/rtc/rtc0/wakealarm'
$ sudo sh -c 'echo `date "+%s" -d "+ 5 minutes"` > 
/sys/class/rtc/rtc0/wakealarm'

Computer woke up after 5 minutes normally. Thus, time setting is
correct. The whole problem is to set date.

Fisslefink, could you please post your BIOS setting?
Next item - there is significant difference between my and your cat 
/proc/driver/rtc listing in alarm date. Your alarm date is set to "****-**-**". 
Mine alarm date shows day of month. Could you please verify if your generated 
cat /proc/driver/rtc just after setting alarm? Thank you.

Leann, is there any way to test Jaunty wakeup without installing it?
(e.g. using just from live CD or using a virtual image?) It took me lot
of time to setup current installation. :)

Karel
2.6.27-9-generic
Mobo: Asus A7V8X-X

-- 
[GUTSY]  RTC alarm does not retain setting from /proc/acpi/alarm
https://bugs.launchpad.net/bugs/139846
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