I've tried to reproduce this:

1. Installed Jaunty from daily build ISO of Wednesday 14th January 2009.
2. Installed with ext3 for /
3. Rebooted using the same live CD ISO image and then converted / to ext4 using:

tune2fs -O extents,uninit_bg,dir_index /dev/sda1
fsck -pf /dev/sda1

4. Rebooted, grub detects an ext4 partition and boots correctly.

and also:

So this simple case of converting / to ext4 seems to work for me. Now I
will try and re-create Dean's set up and retry.

-- 
Patched grub will not boot from EXT4 partition
https://bugs.launchpad.net/bugs/316872
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