I reformatted and its happening again, this time on 2.6.27-9-generic as
well.

It says

ata 1.01 revalidation failed (error=2)

or sometimes

ata 1.01 soft revalidation failed (error=2)

or words to that effect.

Doing fsck -y /dev/sda1/5/6 which has /boot, / and /home respectively
give all partitions as clean so don't know what else needs to be done?

-- 
hard disk corruption
https://bugs.launchpad.net/bugs/310279
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