Please re-open this bug -- I agree 100% with what DaveAbrahams said -
it's the same problem for me. It should at least come up with a proper
error message/question/warning of this, not relying on postinstall to
fail.

If there's a risk that user-installed modules get overwritten, then
perhaps create a backup copy somewhere instead, and report this to the
user...?

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package python-setuptools 0.6c9-0ubuntu1 failed to install/upgrade: 
https://bugs.launchpad.net/bugs/305902
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