Thanks for taking the time to report this bug and helping to make Ubuntu better.
gksudo is used gain root privledges, so if you click "Check" just before hand
to update the list of packages, it will not need to ask for the password again
to Install the updates.
If this is not the case, are the updates still installed or do they fail
to install?
** Changed in: update-manager (Ubuntu)
Status: New => Incomplete
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Update Manager: Install Updates Fails To Reuest Authentication
https://bugs.launchpad.net/bugs/290608
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