I have the same problem.  In my case the server is a SAMBA server
running under Linux, and the client is a laptop running an up-to-date
Ubuntu "hardy".  Several SMB partitions are mounted on my laptop via
automount, for example:

$ cat /etc/auto.freak
# ...
pictures        -fstype=nfs,nosuid,nodev,intr freak:/home/pictures

The server "freak" is at home, unreachable from the internet.  When I am
at work and try to open a nautilus window, it takes ages (multiple
minutes).  If I connect an strace to the nautilus process, I see system
calls like the following:

access("/freak/pictures/incoming/canon", F_OK) = -1 ENOENT (No such file or 
directory)
access("/freak/pictures/incoming/canon", F_OK) = -1 ENOENT (No such file or 
directory)
access("/freak/pictures/incoming/canon", F_OK) = -1 ENOENT (No such file or 
directory)

each one taking about 30 seconds to time out.  This is the case even if
the directory that I am opening with nautilus is on a locally-mounted
partition.  The directories that are being sought are directories that I
have recently accessed using nautilus while at home (i.e., while those
SMB shares were accessible).  During this time, the automounted
partitions are *not* mounted (as determined from the "mount" command).

The long delays make nautilus nearly useless.  I hope this information
helps diagnose the problem.  Let me know if I can help you with any more
information.

-- 
Shutting down server causes Nautilus to slow down on Remote Ubuntu clients 
(SAMBA CIFS)
https://bugs.launchpad.net/bugs/134752
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