I have installed Intrepid from scratch, removing all the cruft from
previous installations in the process.

My machine now seems to work flawlessly with Compiz running. No dropped
connections.

I should note that I did have changed the graphics acceleration to from
XAA to EXA to solve another problem with hangs in Compiz. This is the
major change. I also added a few extra lines which I don't understand
(below the EXA change) to xorg.conf:

        Option          "AccelMethod"   "EXA"
        Option          "AccelDFS"      "off"
        Option          "AGPMode"       "1"
        Option          "AGPFaseWrise"  "1"

It may be that all this has nothing to do with the network droppings,
but there did appear to be a relationship between compiz and the dropped
connections.

-- 
Unreliable network connection with B44 driver
https://bugs.launchpad.net/bugs/279102
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