It's interesting that you are seeing different behaviours in Terminator and 
GNOME Terminal - we use the exact same vte widget they do.
Could you definitely confirm that the same shell/vim configs work in one and 
not in the other? Also are you using screen in either/both? That tends to 
confuse scrolling.

** Changed in: terminator
       Status: New => Incomplete

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Mouse scrolling does not work in vim, mutt etc.
https://bugs.launchpad.net/bugs/291184
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