I had something similar, where the computer would consistently hang for a 
second or two when the frequency was lowered.  My fix was just to manually set 
the 'performance_governor' to 'performance' or 'powersave'.  Some old notes: 
http://www.ii.uib.no/~ketil/ubuntu-prob.log

-k

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system pauses
https://launchpad.net/bugs/64474

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