Re: [Tutor] getting text within an element [attribute text] using elementtree

[ps python]

Dear group, 
In my XML file some attributes have text within an
element. I want to get that text. How can I do that. 
I looked into ElementTree -bits and pieces: and there
is a small function. 

>>> def gettext(elem):
...     text = elem.text or ""
...     for e in elem:
...             text += gettext(e)
...             if e.tail:
...                     text += e.tail
...     return text

>>> for m in
tree.findall('//{org:hprd:dtd:hprdr2}proteinInteractor'):
...     k = gettext(m)
...     print k
...
>>>

I got nothing out of it. 

I tried more preliminary way:

>>> for m in
tree.findall('//{org:hprd:dtd:hprdr2}proteinIn
...     k = 
m.findtext('{org:hprd:dtd:hprdr2}secondaryRef'
...     print k
...
>>> for m in
tree.findall('//{org:hprd:dtd:hprdr2}proteinIn
...     print m
...
>>>

The part of the xml file is listd below. 

Could any one you help me please. 

I want to get :
 <proteinInteractor id="HISTONEH3">

id value:

Thanks
w
 


  <interactions>
<entrySet xmlns="net:sf:psidev:mi"
         
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
          xsi:schemaLocation="net:sf:psidev:mi
http://psidev.sourceforge.net/mi/xml/src/MIF.xsd";
          level="1" version="1">
    <entry>
        <source>
            <names>
                <shortLabel>HPRD</shortLabel>
                <fullName>Human Protein Reference
Database</fullName>
            </names>
            <bibref>
                <xref>
                     <primaryRef db="PubMed"
id="14525934"/>
                     <secondaryRef db="PubMed"
id="14681466"/>
                </xref>
            </bibref>
        </source>
        

        <interactorList>

            <proteinInteractor id="HISTONEH3">
                <names>
 <shortLabel>Histone H3</shortLabel>
                </names>

                <organism ncbiTaxId="9606">
                   <names>
                      <shortLabel>Human</shortLabel>
                      <fullName>Homo
sapiens</fullName>
                   </names>
                </organism>

            </proteinInteractor>


            <proteinInteractor id="ID_HPRD_00303">
                <names>
                    <shortLabel>Minichromosome
maintenance protein 2</shortLabel>
                </names>

                <organism ncbiTaxId="10090">
                   <names>
                      <shortLabel>Mouse</shortLabel>
                      <fullName>Mus
musculus</fullName>
                   </names>
                </organism>

            </proteinInteractor>


            <proteinInteractor id="ID_HPRD_04072">
                <names>
                    <shortLabel>MCM3</shortLabel>
                </names>

                <organism ncbiTaxId="10090">
                   <names>
                      <shortLabel>Mouse</shortLabel>
 <fullName>Mus musculus</fullName>
                   </names>
                </organism>

            </proteinInteractor>


            <proteinInteractor id="ID_HPRD_09094">
                <names>
                    <shortLabel>MCM4</shortLabel>
                </names>

                <organism ncbiTaxId="10090">
                   <names>
                      <shortLabel>Mouse</shortLabel>
                      <fullName>Mus
musculus</fullName>
                   </names>
                </organism>

            </proteinInteractor>


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