Right. apport wouldn't know to grab U-U logs for an apt bug. Attached.
Also below is the journal snippet that lead me to conclude that system
unit updates were responsible:

Dec 14 02:40:02 sphinx systemd[1]: Reloading.
Dec 14 02:40:02 sphinx systemd[1]: snapd.refresh.timer: Adding 10min 24.692802s 
random time.
Dec 14 02:40:02 sphinx systemd[1]: Reloading.
Dec 14 02:40:02 sphinx systemd[1]: snapd.refresh.timer: Adding 1h 3min 
1.020974s random time.
Dec 14 02:40:02 sphinx systemd[1]: Stopped Daily apt activities.
-- Subject: Unit apt-daily.service has finished shutting down
-- Defined-By: systemd
-- Support: http://www.ubuntu.com/support
-- 
-- Unit apt-daily.service has finished shutting down.
Dec 14 02:40:02 sphinx systemd[1]: apt-daily.timer: Adding 7h 38min 41.241571s 
random time.
Dec 14 02:40:02 sphinx systemd[1]: apt-daily.timer: Adding 2h 14.441752s random 
time.
Dec 14 02:40:02 sphinx systemd[1]: Starting Daily apt activities...
-- Subject: Unit apt-daily.service has begun start-up
-- Defined-By: systemd
-- Support: http://www.ubuntu.com/support
-- 
-- Unit apt-daily.service has begun starting up.
Dec 14 02:40:02 sphinx systemd[1]: Started Daily apt activities.
-- Subject: Unit apt-daily.service has finished start-up
-- Defined-By: systemd
-- Support: http://www.ubuntu.com/support
-- 
-- Unit apt-daily.service has finished starting up.
-- 
-- The start-up result is done.
Dec 14 02:40:02 sphinx systemd[1]: apt-daily.timer: Adding 10h 59min 12.586084s 
random time.
Dec 14 02:40:02 sphinx systemd[1]: apt-daily.timer: Adding 7h 36min 31.098210s 
random time.


** Attachment added: "unattended-upgrades.log"
   
https://bugs.launchpad.net/ubuntu/+source/apt/+bug/1649959/+attachment/4791679/+files/unattended-upgrades.log

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https://bugs.launchpad.net/bugs/1649959

Title:
  unattended upgrade of apt kills running apt-daily job

Status in apt package in Ubuntu:
  New

Bug description:
  This morning, I discovered that my new xenial system had attempted an 
unattended upgrade overnight but the upgrade was incomplete. It attempted to 
upgrade
  apt apt-transport-https apt-utils firefox firefox-locale-en 
flashplugin-installer libapt-inst2.0 libapt-pkg5.0 libgme0

  but the unattended-upgrades-dpkg.log log terminates after apt is
  configured.

  I had to dpkg --configure --pending and apt-get -f install to get apt back 
into working order.
  There were no errors, crashes or cores logged.

  The journal indicates that apt-daily.service stopped and restarted around the 
time of the upgrade, so I am assuming that is the problem (that systemd killed 
the update session as the result of an update to the unit files)
  --- 
  ApportVersion: 2.20.3-0ubuntu8
  Architecture: amd64
  CurrentDesktop: XFCE
  DistroRelease: Ubuntu 16.10
  InstallationDate: Installed on 2016-12-06 (7 days ago)
  InstallationMedia: Ubuntu 16.10 "Yakkety Yak" - Release amd64 (20161012.2)
  NonfreeKernelModules: openafs
  Package: apt 1.3.2ubuntu0.1
  PackageArchitecture: amd64
  ProcVersionSignature: Ubuntu 4.8.0-30.32-generic 4.8.6
  Tags:  yakkety
  Uname: Linux 4.8.0-30-generic x86_64
  UpgradeStatus: No upgrade log present (probably fresh install)
  UserGroups: adm cdrom dip lpadmin plugdev sambashare sudo wireshark
  _MarkForUpload: True

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