The only message I get is:
 Indexing completed. Added/Updated: 0 documents. Deleted 0 documents.
Requests: 1, Skipped: 0

And there are no errors in the log.

Here's what the ibm atom feed looks like:

<?xml version="1.0" encoding="utf-16"?>
<atom:feed xmlns:atom="http://www.w3.org/2005/Atom";
xmlns:wplc="http://www.ibm.com/wplc/atom/1.0";
xmlns:age="http://purl.org/atompub/age/1.0";
xmlns:snx="http://www.ibm.com/xmlns/prod/sn";
xmlns:lconn="http://www.ibm.com/lotus/connections/seedlist/atom/1.0";>

  <atom:id>
 
https://[redacted]/files/seedlist/myserver?Action=GetDocuments&amp;Format=ATOM&amp;Locale=en_US&amp;Range=20000&amp;Start=0</atom:id>
  <atom:link
href="https://[redacted]/files/seedlist/myserver?Action=GetDocuments&amp;Range=20000&amp;Start=1000&amp;Format=ATOM&amp;Locale=en_US&amp;State=U0VDT05EXzIwMTQtMDMtMTMgMTY6MjM6NTguODRfMjAxMS0wNi0wNiAwODowNDoxNC42MjJfNmQ1YzQ3MWMtYTM3ZS00ZjlmLWE0OGEtZWZjYjMyZjU2NDgzXzEwMDBfZmFsc2U%3D";
  rel="next" type="application/atom+xml" title="Next page" />
  <atom:generator xml:lang="en-US" version="1.2"
  lconn:version="4.0.0.0">Seedlist Service Backend
  System</atom:generator>
  <atom:category term="ContentSourceType/Files"
  scheme="com.ibm.wplc.taxonomy://feature_taxonomy"
  label="Files" />
  <atom:title xml:lang="en-US">Files : 1,000 entries of Seedlist
  FILES</atom:title>
  <wplc:action do="update" />
  <wplc:fieldInfo id="title" name="Title" type="string"
  contentSearchable="true" fieldSearchable="true"
  parametric="false" returnable="true" sortable="false"
  supportsExactMatch="false" />
  <wplc:fieldInfo id="author" name="Owner's directory id"
  type="string" contentSearchable="false" fieldSearchable="true"
  parametric="false" returnable="true" sortable="false"
  supportsExactMatch="true" />
  <wplc:fieldInfo id="published" name="Created timestamp"
  type="date" contentSearchable="false" fieldSearchable="false"
  parametric="true" returnable="true" sortable="false"
  supportsExactMatch="false" />
  <wplc:fieldInfo id="updated"
  name="Last modification timestamp (major change only, as indicated in UI)"
  type="date" contentSearchable="false" fieldSearchable="false"
  parametric="true" returnable="true" sortable="true"
  supportsExactMatch="false" />
  <wplc:fieldInfo id="summary" name="Description" type="string"
  contentSearchable="true" fieldSearchable="true"
  parametric="false" returnable="true" sortable="false"
  supportsExactMatch="false" />
  <wplc:fieldInfo id="tag" name="Tag" type="string"
  contentSearchable="true" fieldSearchable="true"
  parametric="false" returnable="true" sortable="false"
  supportsExactMatch="false" />
  <wplc:fieldInfo id="commentCount" name="Number of comments"
  type="int" contentSearchable="false" fieldSearchable="false"
  parametric="true" returnable="true" sortable="true"
  supportsExactMatch="true" />
  <wplc:fieldInfo id="downloadCount" name="Number of downloads"
  type="int" contentSearchable="false" fieldSearchable="false"
  parametric="true" returnable="true" sortable="true"
  supportsExactMatch="true" />
  <wplc:fieldInfo id="recommendCount"
  name="Number of recommendations" type="int"
  contentSearchable="false" fieldSearchable="false"
  parametric="true" returnable="true" sortable="true"
  supportsExactMatch="true" />
  <wplc:fieldInfo id="fileUpdated"
  name="Binary file last modification timestamp" type="date"
  contentSearchable="false" fieldSearchable="false"
  parametric="true" returnable="true" sortable="true"
  supportsExactMatch="true" />
  <wplc:fieldInfo id="fileSize" name="Binary file size" type="int"
  contentSearchable="false" fieldSearchable="false"
  parametric="true" returnable="true" sortable="false"
  supportsExactMatch="true" />
  <wplc:fieldInfo id="fileName" name="File name" type="string"
  contentSearchable="true" fieldSearchable="true"
  parametric="false" returnable="true" sortable="true"
  supportsExactMatch="false" />
  <wplc:fieldInfo id="sharedWithUser"
  name="Shared with user's directory id" type="string"
  contentSearchable="false" fieldSearchable="true"
  parametric="false" returnable="true" sortable="false"
  supportsExactMatch="true" />
  <wplc:fieldInfo id="sharedWithUserName"
  name="Shared with user's name" type="string"
  contentSearchable="false" fieldSearchable="false"
  parametric="false" returnable="true" sortable="false"
  supportsExactMatch="false" />
  <wplc:fieldInfo id="libraryId"
  name="The id of library owning the file" type="string"
  contentSearchable="false" fieldSearchable="true"
  parametric="false" returnable="true" sortable="false"
  supportsExactMatch="true" />
  <wplc:fieldInfo id="ORGANISATIONAL_ID"
  name="The id of the organization the owning user belongs to"
  type="string" contentSearchable="false" fieldSearchable="true"
  parametric="false" returnable="true" sortable="false"
  supportsExactMatch="true" />
  <wplc:fieldInfo id="communityId"
  name="The id of the community associated to the file"
  type="string" contentSearchable="false" fieldSearchable="true"
  parametric="false" returnable="true" sortable="false"
  supportsExactMatch="true" />
  <wplc:fieldInfo id="containerType"
  name="The type of the container (library) associated to the file"
  type="string" contentSearchable="false" fieldSearchable="true"
  parametric="false" returnable="true" sortable="false"
  supportsExactMatch="true" />
  <wplc:fieldInfo id="ATOMAPISOURCE" name="Atom API link"
  type="string" contentSearchable="false" fieldSearchable="false"
  parametric="false" returnable="true" sortable="false"
  supportsExactMatch="false" />
  <atom:entry xml:lang="en">
    <atom:id>7dd904f1-698d-4180-aa5a-a5b7d96405c9</atom:id>
    <atom:link
href="http://[redacted]/files/app/file/7dd904f1-698d-4180-aa5a-a5b7d96405c9";
    rel="via" type="application/msword" hreflang="en"
    title="Connections Install Draft.doc" />
    <atom:content xml:lang="en" type="application/msword"
    src="myserver/contents/7dd904f1-698d-4180-aa5a-a5b7d96405c9" />
    <atom:author>
      <atom:name>[redacted]</atom:name>
      <snx:userid>85110DD2-994D-4BC4-91BF-5B318ACB8C4E</snx:userid>
    </atom:author>
    <atom:title>Connections Install Draft.doc</atom:title>
    <atom:updated>2010-07-13T10:06:34-04:00</atom:updated>
    <wplc:action do="insert" />
    <wplc:acls>
      <wplc:acl>85110DD2-994D-4BC4-91BF-5B318ACB8C4E</wplc:acl>
      <wplc:acl>08E7268C-1C16-4932-9219-4D39CA956AC1</wplc:acl>
      <wplc:acl>29D4DDC1-DABE-4ED4-8BF4-4DCB83538E1C</wplc:acl>
      <wplc:acl>9D7F1873-5FD9-4DE0-8AF2-AA425E51CCDF</wplc:acl>
    </wplc:acls>
    <wplc:field id="fileUpdated">
    2010-07-13T10:06:34-04:00</wplc:field>
    <wplc:field id="fileSize">1491968</wplc:field>
    <wplc:field id="fileName">Connections Install
    Draft.doc</wplc:field>
    <wplc:field id="commentCount">0</wplc:field>
    <wplc:field id="downloadCount">3</wplc:field>
    <wplc:field id="recommendCount">0</wplc:field>
    <wplc:field id="ATOMAPISOURCE">
   
http://[redacted]/files/basic/api/library/d6b2e97b-b72a-4d39-bf8b-971fc2213f56/document/7dd904f1-698d-4180-aa5a-a5b7d96405c9/entry</wplc:field>
    <wplc:field id="libraryId">
    d6b2e97b-b72a-4d39-bf8b-971fc2213f56</wplc:field>
    <wplc:field id="sharedWithUser" lconn:refId="0">
    08E7268C-1C16-4932-9219-4D39CA956AC1</wplc:field>
    <wplc:field id="sharedWithUserName"
lconn:refId="0">[redacted]</wplc:field>
    <wplc:field id="sharedWithUser" lconn:refId="1">
    29D4DDC1-DABE-4ED4-8BF4-4DCB83538E1C</wplc:field>
    <wplc:field id="sharedWithUserName"
lconn:refId="1">[redacted]</wplc:field>
    <wplc:field id="sharedWithUser" lconn:refId="2">
    9D7F1873-5FD9-4DE0-8AF2-AA425E51CCDF</wplc:field>
    <wplc:field id="sharedWithUserName"
lconn:refId="2">[redacted]</wplc:field>
    <wplc:field id="containerType">personalFiles</wplc:field>
    <atom:published>2010-07-13T10:06:34-04:00</atom:published>
  </atom:entry>...



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