Not that I am aware of. Since the header isn't really part of the
script bash doesn't evaluate them as far as I know.
-Paul Edmon-
On 05/10/2018 09:19 AM, Dmitri Chebotarov wrote:
Hello
Is it possible to access environment variables in a submit script?
F.e. $SCRATCH is set to a path and I like to use $SCRATCH variable in #SBATCH:
#SBATCH --output=$SCRATCH/slurm/%j.out
#SBATCH --error=$SCRATCH/slurm/%j.err
Since it's Bash script, # are ignored and I suspect these variables need to be
defined on Slurm controller (?).
As a workaround I can run 'sbatch --output=$SCRATCH/slurm/%j.out
--error=$SCRATCH/slurm/%j.err <myscript>' and it works. But is there any way to
use non-slurm env variables via #SBATCH?
Thank you
