Re: [Virtuoso-users] Loading uniprot

2011-09-14 Thread Pierre-Yves Chibon
On Sat, 2011-09-10 at 19:18 +0100, Hugh Williams wrote: > Let me know if this works for you ... I changed the setting as you indicated me and then I loaded the dataset in single thread (couldn't make the mutli-thread working as I wanted). It took 4 days, but the 178G of the uniprot.rdf are in vir

Re: [Virtuoso-users] Loading uniprot

2011-09-10 Thread Pierre-Yves Chibon
dba dba exec="rdf_loader_run();" & > isql dba dba exec="rdf_loader_run();" & > wait > isql dba dba exec="checkpoint;” & > isql dba dba exec="checkpoint_interval(120);" & > > Let me know if this works for you ... >

[Virtuoso-users] Loading uniprot

2011-09-10 Thread Pierre-Yves Chibon
Dear all, I am trying to load uniprot on a quadcore machine with 16Gb of ram and 2 hard-drives in raid 1. I installed virtuoso opensource from the Fedora repository, I therefore have the version virtuoso-opensource-6.1.3-1.fc14.x86_64. I generated the ~/.odbc.ini file, then I load uniprot by: > $

Re: [Virtuoso-users] cite virtuoso

2011-05-12 Thread Pierre-Yves Chibon
On Wed, 2011-05-11 at 19:50 +0200, Sören Auer wrote: > Am 11.05.2011 18:29, schrieb Pierre-Yves Chibon: > > I was wondering, does anybody know how people have referred to > Virtuoso > > on published article? > > Is there an article which have been published, or should be re

[Virtuoso-users] cite virtuoso

2011-05-11 Thread Pierre-Yves Chibon
Hi, I was wondering, does anybody know how people have referred to Virtuoso on published article? Is there an article which have been published, or should be refer to the website? Thanks for your help, Pierre

Re: [Virtuoso-users] loading big file in virtuoso

2011-02-28 Thread Pierre-Yves Chibon
On Tue, 2011-02-15 at 16:12 +, Hugh Williams wrote: > > Being are very large dataset have you tuned your Virtuoso Server for > running on the target OS as detailed at: > http://docs.openlinksw.com/virtuoso/rdfperformancetuning.html For the record (because I did not see it at first).

Re: [Virtuoso-users] sparql and conductor on different port

2011-02-21 Thread Pierre-Yves Chibon
On Mon, 2011-02-21 at 14:39 +0100, Laure Mina wrote: > The created SPARQL endpoint seems accessible from the local machine. I > want to ask if it can be accessible by the other machines that are not > in the local network of the server. You will have to configure your firewall for this, ie openin

Re: [Virtuoso-users] loading big file in virtuoso

2011-02-16 Thread Pierre-Yves Chibon
tantiation and loaded of these datasets in a fraction of the time it > > would take to load the from scratch: > > > > > > http://virtuoso.openlinksw.com/dataspace/dav/wiki/Main/VirtInstallationEC2 > > > > Best Regards > > Hugh Williams > >

[Virtuoso-users] loading big file in virtuoso

2011-02-15 Thread Pierre-Yves Chibon
Hi, I have been trying to load the uniprot rdf file into virtuoso. Uniprot provides a rather big file [1] which uncompressed is ~133GB. I have been trying to load it into virtuoso (6.1.2) but it seems that virtuoso's performance drops after a while and eventually hangs. We tried to load it using

Re: [Virtuoso-users] sparql and conductor on different port

2011-02-11 Thread Pierre-Yves
On Thu, 2011-02-10 at 18:12 +0100, Patrick van Kleef wrote: > > Next you add a "New directory to this line", click on "Type" radio > button and choose "Sparql access point" from the dropdown list and > press Next button. Set "Path" to /sparql and press the "Save > Changes" > button to store.

Re: [Virtuoso-users] sparql and conductor on different port

2011-02-10 Thread Pierre-Yves
Hi Patrick, On Thu, 2011-02-10 at 18:12 +0100, Patrick van Kleef wrote: > > http://docs.openlinksw.com/virtuoso/htmlconductorbar.html#admui.internetdomains > > > > At install time you have your HTTP Server port in your virtuoso.ini > set to 8890, which you want to keep in your local network

[Virtuoso-users] sparql and conductor on different port

2011-02-10 Thread Pierre-Yves
Hi, Although I have been looking through the documentation, I could not find if it is possible to have the sparql endpoint on a different port than the conductor ? For security reason I would like to keep my conductor listening on a different port and be able to publish my sparql endpoint on port

Re: [Virtuoso-users] Upload rdf file from isql

2010-12-16 Thread Pierre-Yves
lliams > Professional Services > OpenLink Software > Web: http://www.openlinksw.com > Support: http://support.openlinksw.com > Forums: http://boards.openlinksw.com/support > Twitter: http://twitter.com/OpenLink > > On 16 Dec 2010, at 10:37, Pierre-Yves wrote: > > &

Re: [Virtuoso-users] Upload rdf file from isql

2010-12-16 Thread Pierre-Yves
, Pierre-Yves wrote: > Hi Hugh, > > I guess you were refering to : > http://virtuoso.openlinksw.com/dataspace/dav/wiki/Main/VirtRDFInsert#Loading%20RDF%20datasets%20into%20one%20or%20more%20Virtuoso%20Graph%20IRIs > and > http://virtuoso.openlinksw.com/dataspace/dav/wiki/Main/VirtRDFIn

Re: [Virtuoso-users] Upload rdf file from isql

2010-12-15 Thread Pierre-Yves
Professional Services > > OpenLink Software > > Web: http://www.openlinksw.com > > Support: http://support.openlinksw.com > > Forums: http://boards.openlinksw.com/support > > Twitter: http://twitter.com/OpenLink > > > > On 14 Dec 2010, at 16:17, Pierre-Yves wr

[Virtuoso-users] Upload rdf file from isql

2010-12-14 Thread Pierre-Yves
Dear list, I have to upload a medium size rdf file into a virtuoso (Version: 06.01.3126). I have been looking at the page [1] but it seems to only go through the webdav when it comes to upload a file. I tried : curl -i -T myrdf.rdf http://localhost:8890/DAV/home/pingou/rdf_sink/test.rdf -u user:

Re: [Virtuoso-users] Create admin user

2010-12-13 Thread Pierre-Yves
> Best Regards > Hugh Williams > Professional Services > OpenLink Software > Web: http://www.openlinksw.com > Support: http://support.openlinksw.com > Forums: http://boards.openlinksw.com/support > Twitter: http://twitter.com/OpenLink > > On 13 Dec 2010, at 12:25, Pierre-Y

Re: [Virtuoso-users] Create admin user

2010-12-13 Thread Pierre-Yves
ervices > OpenLink Software > Web: http://www.openlinksw.com > Support: http://support.openlinksw.com > Forums: http://boards.openlinksw.com/support > Twitter: http://twitter.com/OpenLink > > On 13 Dec 2010, at 12:25, Pierre-Yves wrote: > > > Dear all, > > > >

[Virtuoso-users] Create admin user

2010-12-13 Thread Pierre-Yves
Dear all, I am having a little bit of trouble to create a second admin user in virtuoso. I create my user via conductor > System Admin > User accounts. I gave him the User Type "SQL/ODBC and WebDAV", set his Primary Role to "administrators". I selected the Account Roles "administrators", "SPARQL_S

Re: [Virtuoso-users] Switch off/on

2010-11-16 Thread Pierre-Yves
On Tue, 2010-11-16 at 15:31 +, Hugh Williams wrote: > > Hi Yves, > > I am not sure what this error message is in relation to, can you > please provide more details on when this error is occurring ? Hi Hugh, Thanks for your reply. Trying to explain the problem I actually just solved it. So

Re: [Virtuoso-users] Switch off/on

2010-11-16 Thread Pierre-Yves
On Sun, 2010-11-14 at 15:45 +0100, Pierre-Yves wrote: > > *** Error IM002: [iODBC][Driver Manager]Data source name not found and > no default driver specified. Driver could not be loaded > at line 0 of Top-Level: > > I am wondering if my installation is not missing someth

Re: [Virtuoso-users] Switch off/on

2010-11-14 Thread Pierre-Yves
On Sun, 2010-11-14 at 21:35 +0600, Ivan Mikhailov wrote: > Hello Pierre, > > The most reliable is to connect to the Virtuoso via isql tool and type > shutdown; > command after the "SQL>" prompt. Similarly, you can append > exec="shutdown" > > at the end of command line that calls isql, e.g., > is

[Virtuoso-users] Switch off/on

2010-11-14 Thread Pierre-Yves
Dear all, I am still quite new with virtuoso management and I am having some problems regarding its start and stop. I start it using "virtuoso-t +configfile virtuoso.ini", then I upload my RDF into different graphs, but then I am having problem to turn off virtuoso without losing the information u

[Virtuoso-users] virtuoso and bio2rdf

2009-09-14 Thread Pierre-Yves
Dear list, I am trying to set up the integration between bio2rdf and the open-source version of virtuoso. I hope this is the right place to ask for advices, if not please let me know. I have set up the open-source version of virtuoso on my machine and installed the go schema using this how-to [1]

Re: [Virtuoso-users] Build failed

2009-08-31 Thread Pierre-Yves
Dear all, With the help of Ivan Mikhailov I have been able to move forward in the build but I now face another error available in [1]. The complete build log is in [2]. Has anyone seen this before ? Something that surprises me is the: Inexistent file resource (./vad/data/demo/docsrc/Makefile) er

[Virtuoso-users] Build failed

2009-08-11 Thread Pierre-Yves
Dear list, I have been trying to compile virtuoso under Fedora 11. I downloaded the file virtuoso-opensource-6.0.0-tp1.tar.gz from sourceforge (sha1sum: b4d43bcb188936370598249d03cf6ddd1bca9f62) and I tried to compile it. The build fails at the make stage with the error given in the attached docum