[Bug 766023] Re: amap-align version 2.2-1 failed to build on i386

2011-06-23 Thread Charles Plessy
Fixed in 2.2-3. ** Changed in: amap-align (Ubuntu Oneiric) Status: New => Fix Released -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/766023 Title: amap-align version 2.2-1 failed to build o

[Bug 770926] Re: phyml version 2:20100123-1 failed to build on amd64 with GCC-4.6/oneiric

2011-06-24 Thread Charles Plessy
It looks like 2:20100720-1 built fine, so I will close this bug. https://launchpad.net/ubuntu/+source/phyml/2:20100720-1 ** Changed in: phyml (Ubuntu Oneiric) Status: New => Fix Released -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to

[Bug 732281] Re: libnucleus error in fdnapars and others after updates

2011-06-14 Thread Charles Plessy
Hi Wolfgang, here in Yokohama things have settled down and life has returned to normal. In Ubuntu 11.04 (Natty Narwhal), you will find the latest EMBOSS packages, properly tied with the EMBASSY packages. I have installed Natty on a friend's computer recently, and on the EMBOSS side, thinks looke

[Bug 732281] Re: libnucleus error in fdnapars and others after updates

2011-06-07 Thread Charles Plessy
stall build-essential devscripts dget -x http://archive.ubuntu.com/ubuntu/pool/multiverse/e/embassy-phylip/embassy-phylip_3.69+20100721-3.dsc cd embassy-phylip-3.69+20100721-3 sudo mk-build-deps -r -i debuild -us -uc cd .. sudo dpkg -i embassy-phylip*deb Cheers, -- Charles Plessy Debian Med pack

[Bug 749171] Re: epcr version 2.3.12-1 failed to build on i386

2011-06-07 Thread Charles Plessy
** Changed in: epcr (Ubuntu Oneiric) Status: Fix Committed => Fix Released -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/749171 Title: epcr version 2.3.12-1 failed to build on i386 -- ubunt

[Bug 770831] Re: njplot version 2.3-2 failed to build on amd64 with GCC-4.6/oneiric

2011-06-07 Thread Charles Plessy
Fixed in 2.3-3 ** Bug watch added: Debian Bug tracker #614432 http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=614432 ** Also affects: njplot (Debian) via http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=614432 Importance: Unknown Status: Unknown ** Changed in: njplot (Ubuntu)

[Bug 809756] Re: t-coffee version 8.99-1 failed to build on armel

2011-08-03 Thread Charles Plessy
** Bug watch added: Debian Bug tracker #631249 http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=631249 ** Also affects: t-coffee (Debian) via http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=631249 Importance: Unknown Status: Unknown -- You received this bug notification because

[Bug 779999] Re: seaview crash after alignment or some window resizing

2011-09-04 Thread Charles Plessy
Dear Tristan, SeaView was upgraded to version 4.3 in Oneiric. Do you think you could try to reproduce the bug with that version ? Have a nice day, -- Charles Plessy Debian Med packaging team http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- You received this bug

[Bug 853686] [NEW] No network interfaces detected in the Amazon EC2.

2011-09-19 Thread Charles Plessy
. │ │ │ ││ │ │ └───┘ Using the same approach with Debian Squeeze's installer, the network can be autoconfigured successfully (via preseeding). Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan ** Affects: netcfg (Ubuntu) Importance: Undecided Status: New -- You received thi

[Bug 632446] Re: Please sync imagej (universe) 1.44e-1 from Debian unstable (main)

2010-10-23 Thread Charles Plessy
Hi, it looks like imagej was synced to 1.44e-1 in the Natty Narwhal. Have a nice day, -- Charles Plessy Debian Med packaging team Tsurumi, Kanagawa, Japan ** Changed in: imagej (Ubuntu) Status: New => Fix Released -- Please sync imagej (universe) 1.44e-1 from Debian unstable (m

[Bug 661545] Re: imagej refuses to quit

2010-10-23 Thread Charles Plessy
** Bug watch added: Debian Bug tracker #600997 http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=600997 ** Also affects: imagej via http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=600997 Importance: Unknown Status: Unknown -- imagej refuses to quit https://bugs.launchpad.net/bugs

[Bug 658240] Re: package blast2 (not installed) failed to install/upgrade: trying to overwrite '/usr/bin/rpsblast', which is also in package ncbi-blast 0:2.2.22 -1

2011-02-21 Thread Charles Plessy
fine with the version of the blast2 package. Have a nice day, -- Charles Plessy Debian Med packaging team http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https

[Bug 770770] Re: last-align version 146-1 failed to build on amd64 with GCC-4.6/oneiric

2011-05-07 Thread Charles Plessy
Fixed in Debian (162-1) ** Bug watch added: Debian Bug tracker #625084 http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=625084 ** Also affects: last-align (Debian) via http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=625084 Importance: Unknown Status: Unknown -- You received thi

[Bug 766023] Re: amap-align version 2.2-1 failed to build on i386

2011-05-13 Thread Charles Plessy
** Bug watch added: Debian Bug tracker #624990 http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=624990 ** Also affects: amap-align (Debian) via http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=624990 Importance: Unknown Status: Unknown -- You received this bug notification becaus

[Bug 770770] Re: last-align version 146-1 failed to build on amd64 with GCC-4.6/oneiric

2011-05-15 Thread Charles Plessy
** Changed in: last-align (Ubuntu) Status: New => Fix Committed -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/770770 Title: last-align version 146-1 failed to build on amd64 with GCC-4.6/onei

[Bug 749171] Re: epcr version 2.3.12-1 failed to build on i386

2011-05-15 Thread Charles Plessy
Fixed in 2.3.12-2 http://packages.qa.debian.org/e/epcr/news/20110222T111720Z.html ** Bug watch added: Debian Bug tracker #614482 http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=614482 ** Also affects: epcr (Debian) via http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=614482 Importance:

[Bug 712004] Re: samtools version is outdated in Lucid

2011-05-20 Thread Charles Plessy
ucid1, as other packages like libbio-samtools-perl would not be buildable. I may revert again if we start to backport libbio-samtools-perl 1.28-2 or superior, or new packages like cufflinks. Have a nice week-end, -- Charles Plessy Debian Med packaging team http://www.debian.org/devel/debia

[Bug 690997] Re: Would like package to include additional header files

2011-05-08 Thread Charles Plessy
libbio-samtools-perl during the transition to Perl 5.12 that currently takes place in Debian.) In addition, we are preparing a package for Cufflinks. You can see its development at the following URL. http://git.debian.org/?p=debian-med/cufflinks.git Have a nice day, -- Charles Plessy Debian Med

[Bug 749107] Re: dialign version 2.2.1-3 failed to build on i386

2011-05-23 Thread Charles Plessy
** Changed in: dialign (Ubuntu) Status: New => Fix Released -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/749107 Title: dialign version 2.2.1-3 failed to build on i386 -- ubuntu-bugs mailin

[Bug 771068] Re: probcons version 1.12-7 failed to build on amd64 with GCC-4.6/oneiric

2011-05-23 Thread Charles Plessy
Fixed, see http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=625036 ** Changed in: probcons (Ubuntu) Status: New => Fix Released ** Bug watch added: Debian Bug tracker #625036 http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=625036 -- You received this bug notification because you are

[Bug 749107] Re: dialign version 2.2.1-3 failed to build on i386

2011-04-10 Thread Charles Plessy
** Bug watch added: Debian Bug tracker #618057 http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=618057 ** Also affects: dialign (Debian) via http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=618057 Importance: Unknown Status: Unknown -- You received this bug notification because y

[Bug 668798] Re: jemboss package does not depend on emboss package

2010-10-31 Thread Charles Plessy
Dear Kris, thank you very much for your report. This is already fixed in the Natty Narwhal. Have a nice day, -- Charles Plessy Debian Med packaging team http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan ** Changed in: emboss (Ubuntu) Status: New => Fix Relea

[Bug 661573] [NEW] Reduction of the diff with Debian ?

2010-10-15 Thread Charles Plessy
is necessary to comply with the Apache license 2.0. - The lintian overrides and the README.Debian notice about rpath, while not essential to Ubuntu, are probably better to be ignored than deleted. Have a nice day, -- Charles Plessy Debian pkg-eucalyptus team http://wiki.debian.org/pkg

[Bug 624545] Re: package seaview (not installed) failed to install/upgrade: trying to overwrite '/usr/share/applications/seaview.desktop', which is also in package bio-linux-seaview 0:4.2-0

2010-10-24 Thread Charles Plessy
remove bio-linux-seaview if possible. Do you mind if I close this bug, or would you like to keep it open until an update of Bio Linux eventually resolves the problem? Have a nice day, -- Charles Plessy Debian Med packaging team http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

[Bug 526356] Re: restrict and remap segmentation faults - lucid version on karmic system

2010-10-24 Thread Charles Plessy
Fixed in the Natty Narwhal. ** Changed in: emboss (Ubuntu) Status: New => Fix Released -- restrict and remap segmentation faults - lucid version on karmic system https://bugs.launchpad.net/bugs/526356 You received this bug notification because you are a member of Ubuntu Bugs, which is sub

[Bug 526347] Re: frestdist documentation should not be in emboss-doc

2010-10-24 Thread Charles Plessy
** Changed in: emboss (Ubuntu) Status: New => Fix Released -- frestdist documentation should not be in emboss-doc https://bugs.launchpad.net/bugs/526347 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list

[Bug 525662] Re: Dependency on c shell necessary?

2010-10-24 Thread Charles Plessy
Fixed since the Maverick Meerkat. ** Changed in: emboss (Ubuntu) Status: Confirmed => Fix Released -- Dependency on c shell necessary? https://bugs.launchpad.net/bugs/525662 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubu

[Bug 588102] Re: perlprimer not up to date on repository

2010-10-24 Thread Charles Plessy
Hello, the package was automatically synchronised with Debian since the Maverick Meerkat. Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan ** Changed in: perlprimer (Ubuntu) Status: New => Fix Released -- perlprimer not up to date on repository https://bugs.launchpad.

[Bug 137847] Re: xview does not build correctly on amd64, causing treetool crashes on startup

2010-07-16 Thread Charles Plessy
For the record, treetool was removed from the Debian unstable and testing branches, and will therefore not be part of future releases. -- Charles Plessy Debian Med packaging team http://www.debian.org/devel/debian-med/ Tsurumi, Kanagawa, Japan -- xview does not build correctly on amd64

[Bug 298587] Re: xkbsel install problem

2010-08-06 Thread Charles Plessy
** Bug watch added: Debian Bug tracker #591592 http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=591592 ** Also affects: xkbsel (Debian) via http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=591592 Importance: Unknown Status: Unknown -- xkbsel install problem https://bugs.launchpad

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