2.1.8-1 was published in jaunty-release on 2008-11-05.
** Changed in: ggobi (Ubuntu)
Status: New => Fix Released
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ggobi needs version update
https://bugs.launchpad.net/bugs/242551
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Currently, Epigrass in Ubuntu is at the latest upstream release.
** Changed in: epigrass (Ubuntu)
Status: New => Fix Released
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[needs packaging] epigrass
https://bugs.launchpad.net/bugs/326461
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Hello,
Epigrass has been updated in Ubuntu Karmic. Do you have a chance to test
it ?
https://launchpad.net/ubuntu/karmic/+source/epigrass/2.0b3~dfsg-1
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Running error
https://bugs.launchpad.net/bugs/381594
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2.0b1 has much less files than the 1.5 version. Can you indicate
us which sources to use to update the epigrass packages?
Have a nice day,
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Debian Med packaging team
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Tsurumi, Kanagawa, Japan
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New upstream release of epigrass (2.0)
https
Hi there,
Epigrass is currently hosted in the Python Package Index. See:
http://pypi.python.org/pypi?%3Aaction=pkg_edit&name=epigrass
https://bugs.launchpad.net/ubuntu/+source/epigrass/+bug/271789
Maybe this Launchpad can be closed ?
Have a nice day,
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Debian Med packa
Thanks a lot for the fast answer,
We are preparing an updated package with version 2.0b3. As in previous
versions, we have to remove the PDF documentation as the absence of its
sources make it a non-free document according to our guidelines. It
would be much appreciated if your next release could
Hi all,
it is uploaded:
bioperl (1.6.0-2) unstable; urgency=low
.
* Removed patch system (not used):
- removed instuctions in debian/rules;
- removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
- uncommented test command in debian/rules;
- uncomment
Hello,
exonerate 2.2 has been uploaded to Debian. It can be used for a
synchronisation request.
https://wiki.ubuntu.com/SyncRequestProcess
Have a nice day,
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Debian Med packaging team
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Tsurumi, Kanagawa, Japan
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exonerate 2.2 upgrade
skencil. The "suggested"
packages will not be installed automatically.
I hope this explains…
Have a nice day,
-- Charles Plessy
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Preview in extrude does not work
https://bugs.launchpad.net/bugs/285046
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Have you tried python-lxml ?
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Preview in extrude does not work
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Then sadly I can not help you further, because on my system it is the
necessary and sufficient package to reproduce this bug :(
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Preview in extrude does not work
https://bugs.launchpad.net/bugs/285046
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Hello,
sorry for the misunderstanding: I did not want to suggest anybody to
move to Lenny. The purpose of my message was to inform Ubuntu developers
that the binary package that is in Hardy works unmodified on Debian
Lenny, because it suggests that the cause for the black screen is
probably to be
not work on amd64 without fixing the xview packages.
Have a nice day,
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treetool crashes on start
https://bugs.launchpad.net/bugs/137847
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upload bioperl_1.6.0-2 to
Unstable shortly after with this fix (and others) and a changelog entry
closing this Lauchpad bug. Otherwise, I will upload to Experimental
again.
Have a nice day,
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Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
The package has been updated (minor changes) on Debian (0.2.2b1-4). I am
not sure if it will change something, but maybe you can ask the MOTU to
sync the packages?
Have a nice day,
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Aeskulap images not seen
https://bugs.launchpad.net/bugs/229681
You received this bug notification
*** This bug is a duplicate of bug 229681 ***
https://bugs.launchpad.net/bugs/229681
** This bug has been marked a duplicate of bug 229681
Aeskulap images not seen
--
fails to recognize DICOM files, fails to display anything
https://bugs.launchpad.net/bugs/267554
You received this bug not
/cgi-bin/bugreport.cgi?bug=492842
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Tsurumi, Kanagawa, Japan
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Aeskulap images not seen
https://bugs.launchpad.net/bugs/229681
You received this bug notification because you are a member of Ubuntu
Hello,
2.1.0 is now available in Debian. You can probably request a
synchronisation as documented in
https://wiki.ubuntu.com/SyncRequestProcess.
Have a nice day,
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Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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exonerate 2.1.0
This bug has been solved in version 1.1.3-1.
Have a nice day,
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Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
** Changed in: primer3 (Ubuntu)
Status: New => Fix Released
--
primer3 does not output complete primer name
Good news !
The 0.2.2b1-4 package in karmic depends on dcmtk, so the problem will be
automatically solved at the next Ubuntu release.
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ectory
> /usr/bin/R: line 182: exec: /usr/lib/R/bin/exec/Rgnome: cannot execute: No
> such file or directory
Dear Tim,
FYI, there was a thread on this subject on a R mail list:
http://www.mail-archive.com/r-sig-debian@r-project.org/msg00065.html
Have a nice day,
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http
ib/R/bin/exec/Rgnome: cannot execute: No
> such file or directory
Dear Peter,
did you read the following thread on the R-sig-Debian mailing list?
http://www.mail-archive.com/r-sig-debian@r-project.org/msg00065.html
Have a nice day,
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Wako, Saitama, Japan
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Gnome GUI not wor
Le Mon, Jul 10, 2006 at 08:31:24AM -, Peter Hopfgartner a écrit :
> Dear Charles,
>
> thanks for your response. I have looked at them following your
> suggestion. But, what shoud I do? I searched for a package (used R -g
> tk) called gnomeGUI and did not find it in the list.
Dear Peter,
I do
hich installs a .desktop file, which is not yet in
Debian because it will be part of a broader update whith things such as
lesstif transition.
Feel free to use it in Ubuntu in the meantime.
Have a nice day,
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Wako, Saitama, Japan
diff -ruN clustalw-1.83-orig/debian/clustalw.me
he Debian
> maintainer uploading 5.11, whichever comes last.
Do not hesitate to file a wishlist bug against the Debian package,
and/or to contact the debian-science mailing list if you want to push
for this...
Have a nice day,
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http://charles.plessy.org
Wako, Saitama, Japan
-
to the design of Ubuntu,
it also saves time from the MOTUs
Have a nice day,
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http://charles.plessy.org
Wako, Saitama, Japan
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Why not use 5.11
https://launchpad.net/bugs/92715
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rk, you can turn it into a 5.11 source
package
http://packages.ubuntu.com/feisty/source/maxima
Have a nice day,
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Wako, Saitama, Japan
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Why not use 5.11
https://launchpad.net/bugs/92715
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ht
specific to Ubuntu.
http://charles.plessy.org/debian/
Have a nice day,
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Wako, Saitama, Japan
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Why not use 5.11
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untu-science
http://lists.debian.org/debian-science/
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ons are working. I don't know where the
> bug lies (SCIM itself? SCIM misconfiguration on behalf of Ubuntu?), but
> at least for my case I have found the cause and a workaround.
Dear Stefano,
The im-switch program from the im-switch package will help you to
configure this once f
Dear all,
This is actually the normal behaviour for Debian Pure Blends
metapackages, to suggest packages that are not yet existing. See:
http://blends.alioth.debian.org/blends/ch-
technology.en.html#s-metapackages
Have a nice day,
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Debian Med packaging team
http
Hi Stunts and Fabrice,
Indeed, libqt4-dev and other packages in Lucid are already in version
4.6 and clustalx does not like this. I confirmed in a PPA that clustalx
fails to build currently in Lucid
(https://launchpad.net/~plessy/+archive/plessy/+build/143).
About the patch (there is only one
,
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Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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em_pscan and em_cons not found for jemboss
https://bugs.launchpad.net/bugs/527019
You received this bug notification because you are a member of Ubuntu
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Hello everybody,
This is fixed in Lucid since version 1.43l-1, that depends on
openjdk-6-jre | java2-runtime.
Have a nice day,
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Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
ImageJ fails to run - /usr/share/imagej/jni/*: No such
),
you will obtain a package that is installable on karmic.
Have a nice day
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Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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libfontconfig1 - high version in embassy-phylip
https://bugs.launchpad.net/bugs/526350
You received this bug
Dear Bela,
this is a very good point. Since the emboss binary package does not
contain C shell scripts, this dependency is not needed. I will remove in
the next package update (to upstream version 6.2.0), which I hope to do
soon.
Have a nice day,
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Debian Med packaging team
Dear Bela,
have you also updated the libajax6 and libnucleus6 packages? Please let
me know if that solves your problem, so that I tighten the dependency of
the EMBOSS packages on these libraries.
Cheers,
--
Charles Plessy
Debian Med packaging team
http:www.debian.org/devel/debian-med
Tsurumi
Hi all,
For the record, the reason why Debian's clustalx has not migrated in
testing is only the lack of autobuilders for non-free packages. There is
no release-critical problem in clustalx 2.0.12-2.
Cheers,
--
Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debia
Excellent! I added $(RM) moc_* to the clean target in debian/rules and
the package builds fine on Lucid:
https://launchpad.net/~plessy/+archive/plessy/+build/1472225
I will update the Debian package soon.
Have a nice day,
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Package heavily out of date
https://bugs.launchpad.net/b
Dear Stunts,
I just updated the clustalx package in Debian. You can contact MOTUs to
request a sync.
Have a nice day,
--
Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debian/med
Tsurumi, Kanagawa, Japan.
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Package heavily out of date
https://bugs.launchpad.net/bugs
n also have a look at the `shared-mime-info` package for another
way to associate the `.pages` file suffix to the
`application/vnd.apple.pages` media type.
Have a nice day,
Charles Plessy
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Thanks for the update. Closing accordingly.
** Changed in: mime-support (Ubuntu)
Status: Confirmed => Fix Released
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https://bugs.launchpad.net/bugs/1246939
Title:
package mime-
** Changed in: mime-support (Ubuntu)
Status: New => Fix Released
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Title:
package okular 4:4.9.2-0ubuntu1 failed to install/upgrade: subpro
** Changed in: mime-support (Ubuntu)
Status: Incomplete => Fix Released
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Title:
run-mailcap does not work on jpeg files
To manage notific
Thanks Scott ! This is very timely as Debian's cloud-init package just
got http://bugs.debian.org/750314 filed because the package could not be
rebuilt in a chroot.
Do you by chance plan an upstream release of cloud-init in the near
future ? If not, I will apply revision 976 as a patch to the De
Fixed in version 1.1.21-3
** Changed in: perlprimer (Ubuntu)
Status: Confirmed => Fix Released
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Title:
perlprimer crashes on start: Can't
SAMtools
developers for their recommendation.
Have a nice day,
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Debian Med packaging team
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Illkirch, France
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Closing this bug as the media type application/vnd.debian.binary-package
is being deployed.
** Changed in: mime-support (Ubuntu)
Status: New => Fix Released
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** Changed in: treeviewx (Ubuntu)
Status: New => Fix Released
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Title:
treeviewx crashes when opening a file
To manage notifications about
The problem is not there anymore in version 3.23~dfsg-2.
** Changed in: mummer (Ubuntu)
Status: New => Fix Released
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Title:
paths in the n
Hi Diane,
I am closing this bug as it looks like the support for 10.04 LTS has
expired except for server issues.
Have a nice weeke-end,
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** Changed in: staden-io-lib (Ubuntu)
Status: New => Fix Released
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bug in Partman, or do you think it should be reassigned
somewhere else ?
Have a nice day,
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https://bugs.launchpad.net/bugs/862903
Title
Just for the record, here is the preseed file I use.
** Attachment added: "Preseed to start the network console."
https://bugs.launchpad.net/ubuntu/+source/partman-base/+bug/862903/+attachment/2734690/+files/ubuntu-small-preseed.txt
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causing trouble, so I will keep it to minimise the
delta with Ubuntu.
I am opening this bug in Launchpad to track the issue, in order to
remove the diversion if eventually ureadahead supports detecting
the presence of cloud-init.
Have a nice day,
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Tsurumi, Kanagawa, Ja
Hello,
fastqc is now at the latest version in Utopic and Vivid, so I close this
report.
Have a nice day,
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** Changed in: fastqc (Ubuntu)
Status: New => Fix Released
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Closing as this bug was solved in
https://bugs.launchpad.net/ubuntu/+bug/506702
** Changed in: mime-support (Ubuntu)
Status: Triaged => Fix Released
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Closing as it was fixed in https://bugs.launchpad.net/ubuntu/+bug/506702
** Changed in: mime-support (Ubuntu)
Status: Confirmed => Fix Released
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https://bugs.launchpad.net/bugs/561
Closing as it is shared-mime-info, not mime-support, that provides the
media type ‘application-x-desktop’. Please feel free to re-open,
preferably on mime-support.
** Changed in: mime-support (Ubuntu)
Status: Confirmed => Fix Released
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Closing for lack of activity. Please feel free to reopen.
** Changed in: mime-support (Ubuntu)
Status: Confirmed => Fix Released
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Title:
p
Closing in mime-support as the bug was about Launchpad serving the wrong
media type.
** Changed in: mime-support (Ubuntu)
Status: Confirmed => Fix Released
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Closing for lack of activity. Please feel free to reopen if you are
still affected by this bug.
** Changed in: mime-support (Ubuntu)
Status: New => Fix Released
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Closing as the attached file seems corrupted (impossible to decompress)
and for lack of activity.
** Changed in: mime-support (Ubuntu)
Status: Confirmed => Fix Released
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Closing as it was solved in the libreoffice packages (which are where
the bug should have been reported).
** Changed in: mime-support (Ubuntu)
Status: New => Fix Released
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Closing in mime-support as /etc/mime.types contains application/visio
since 3.51-1.
** Changed in: mime-support (Ubuntu)
Status: Confirmed => Fix Released
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Dear wdesmet,
thank you for your report. I suspect that the problem may rather be
that the JPEG file is corrupted. Have you tested with another JPEG
file, and have you confirmed that the p1000459.jpg file can be opened
with other programs ?
Have a nice day,
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Tsurumi
Dear Fehrat,
are you still affected by this bug ? If not, I will close it.
Have a nice week-end,
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Tsurumi, Kanagawa, Japan
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?
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Title:
package mime-support 3.54ubuntu1 failed to install/upgrade: subprocess
installed
** Changed in: emboss-explorer (Ubuntu)
Status: New => Fix Released
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Title:
Emboss-explorer broken in 12.10
To manage notifications about
Please remove njplot from the list of the packages affected by
LP#889889.
** Changed in: njplot (Ubuntu)
Status: New => Invalid
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Title:
Us
> But njplot is affected.
> /usr/share/app-install/icons/njplot.gif
This file belongs to the app-install-data package:
http://packages.ubuntu.com/precise/all/app-install-data/filelist
And yes, I agree that a screenshot does not make a nice icon :)
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*** This bug is a duplicate of bug 857662 ***
https://bugs.launchpad.net/bugs/857662
Thanks a lot. I confirm that the problem is solved in the 28-Sep-2011
build of the oneiric installer.
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Console output for Oneirics d-i on EC2.
** Attachment added: "Console output for Oneirics d-i on EC2."
https://bugs.launchpad.net/ubuntu/+source/netcfg/+bug/853686/+attachment/2451502/+files/853686_oneiric.txt.gz
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Console output diff between Squeezes and Oneirics d-i on EC2.
** Patch added: "Console output diff between Squeezes and Oneirics d-i on EC2."
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Thanks a lot for the fast response, and sorry for the delay in my answer
(holidays). I attached a console output from Debian's and Ubuntu's
installers, that shows that indeed xen-netfront is needed and loaded
(“Initialising Xen virtual ethernet driver”) in Debian but not in
Ubuntu. I also attache
Console output for Squeezes d-i on EC2.
** Attachment added: "Console output for Squeezes d-i on EC2."
https://bugs.launchpad.net/ubuntu/+source/netcfg/+bug/853686/+attachment/2451503/+files/853686_squeeze.txt.gz
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Closing as next update will change the description in a way that removes
the non-breaking space (SeaView now works with Clustal Omega instead of
Custal W).
** Changed in: seaview (Ubuntu)
Status: New => Fix Released
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backport on Debian Med's PPA:
https://launchpad.net/~debian-med/+archive/ppa/+sourcepub/2512983
/+listing-archive-extra
Have a nice day,
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Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
** This bug has been marked a duplicate o
Marking invalid as I do not think that samtools will ever be updated in
Lucid.
** Changed in: samtools (Ubuntu)
Status: New => Invalid
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Titl
Public bug reported:
Dear MOTUs,
r-cran-qvalue is replaced by r-bioc-qvalue (as the upstream source moved
from CRAN to Bioconductor). You can delete r-cran-qvalue from Ubuntu.
Have a nice day,
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Debian Med packaging team
Tsurumi, Kanagawa, Japan
** Affects: r-cran-qvalue
This is already fixed in our Subversion repository and will take effect
at the upload of debian-med 1.12.
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Tsurumi, Kanagawa, Japan
** Changed in: debian-med (Ubuntu)
Status: New => Fix Committed
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** Bug watch added: Debian Bug tracker #636634
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=636634
** Also affects: mafft (Debian) via
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=636634
Importance: Unknown
Status: Unknown
** Changed in: mafft (Ubuntu)
Status: New =
Hello,
mafft 6.850-1 is indeed broken. This is the bug #636634 in Debian.
I have just uploaded in Debian Med's PPA a backport of the current
version in Debian Wheezy.
https://launchpad.net/~debian-med/+archive/ppa/+sourcepub/2512983
/+listing-archive-extra
Have a nice day,
--
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I am not a Ubuntu user (I track the bugs in this package because I
maintain it in Debian, where it comes from), so I only have guesses...
For Lucid (LTS as well), I have not seen bugs in scientific packages
from the "multiverse" component being corrected, so I am not sure if
mafft will be updated
Hello,
1.46+dfsg-5 was built using jdk16.xml. Can you confirm that it solved
your problem ?
Have a nice day,
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Tsurumi, Kanagawa, Japan
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Conversely, what can be corrected is the absence of programs that
declare that they handle application/x-debian-package. I see that for
instance "MimeType=application/x-deb;application/x-debian-package;" in
/usr/share/applications/gdebi.desktop.
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Hello,
Maybe Wikipedia should be corrected instead of mime-support ? Some
packages like gdebi support both media types.
In the long-term, I think that we should migrate to something like
application/vnd.debian.binary-package.
Cheers,
-- Charles Plessy, Tsurumi, Kanagawa, Japan.
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You
Closing as it is fixed since 3.51-1.
** Changed in: mime-support (Ubuntu)
Status: New => Fix Released
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https://bugs.launchpad.net/bugs/695888
Title:
add application/json to /etc
procedures for vendor and personal trees are being
implemented with the update of RFC 4288[1], that states: "it should
rarely, if ever, be necessary to use unregistered types. Therefore, use
of types in the 'x.' tree is strongly discouraged."
Have a nice week-end,
-- Cha
Hello,
this must be coming from another package, because /etc/mime.types does
not mention this extension nor this media type. Also it may have been
solved sicne. (I do not see the problem in shared-mime-info, for
example). I am therefore closing this bug.
Have a nice week-end,
-- Charles Plessy
This was a bug in the antiword package, which seems to have been fixed
already. I am therefore closing this bug.
** Changed in: mime-support (Ubuntu)
Status: New => Fix Released
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Thanks Wolfgang for the report !
I just tried on my Debian Sid, and emboss-explorer hangs because the
EMBOSS command 'wossname' hangs. Can you confirm it on Ubuntu, and
reassign the bug to emboss if it is the case ?
Have a nice Sunday,
--
Charles Plessy
Debian Med packaging
Precision: the change has been committed, but it will only be uploaded
to Debian unstable after the next stable release.
Cheers,
--
Charles Plessy
Illkirch-Graffenstaden, France
** Bug watch added: Debian Bug tracker #688383
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=688383
** Also
Dear Tristan,
I am marking this bug incomplete as long as there is not test data
available to reproduce it.
Do you think you can provide ?
Have a nice day,
--
Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan.
** Changed in: seaview
Public bug reported:
Hi Scott,
this is http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=674237. Can
you add the following line in debian/cloud-init.postrm for the purge ?
rm -f /etc/apt/apt.conf.d/90cloud-init-pipelining
Have a nice day,
--
Charles
** Affects: cloud-init (Ubuntu)
I
le running a package where I barely understand much of
what its main script seems to be capable of doing.
Apart from this, unless Ubuntu has diverged on the kernel hooks, it seems to me
that the package should be working fine on both Debian and Ubuntu.
Have a nice Sunday,
Charles
--
Charles
Fixed in 2.4.1-13.
** Changed in: wise (Ubuntu)
Status: New => Fix Released
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https://bugs.launchpad.net/bugs/1084606
Title:
wise depends on files in -doc to run
To manage notif
** Changed in: seaview (Ubuntu)
Status: New => Fix Released
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https://bugs.launchpad.net/bugs/624545
Title:
package seaview (not installed) failed to install/upgrade: trying to
ed and was formatted as a ext2 filesystem on the
whole disk (/dev/sdb). It was booted accordingly with the aki-ec5df7ed
kernel and ‘root (hd0)’ in GRUB (see above blog post).
The Debian bug http://bugs.debian.org/637784 is probably related to
this.
Have a nice day,
--
Charles Plessy
Tsurumi, Kanag
I am closing the bug, since it is fixed since Maverick. Before this, I
tagged it ‘lucid’ as a reminder that it is not fixed in the LTS. But I
do not know if it is the proper way to do…
** Tags added: lucid
** Changed in: r-cran-vcd (Ubuntu)
Status: New => Fix Released
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Corrected by Andreas in 1.2-1-2. Thak you for the patch.
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Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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