[Bug 1792386] [NEW] cod-tools: debian unstable has newer version of the package

2018-09-13 Thread Andrius Merkys
Public bug reported: Debian unstable branch has cod-tools v2.2 packaged, fixing the issue that required patching the package in Ubuntu. Please consider upgrading to it. ** Affects: cod-tools (Ubuntu) Importance: Undecided Status: New -- You received this bug notification because y

[Bug 1789210] Re: from pip import main ImportError: cannot import name main

2018-09-13 Thread Andrius Merkys
*** This bug is a duplicate of bug 1772746 *** https://bugs.launchpad.net/bugs/1772746 ** This bug has been marked a duplicate of bug 1772746 After upgrade to 18.04, all pip and pip3 commands fail -- You received this bug notification because you are a member of Ubuntu Bugs, which is subs

[Bug 1772746] Re: After upgrade to 18.04, all pip and pip3 commands fail

2018-09-13 Thread Andrius Merkys
It seems that pip was updated using 'pip install -U pip', what made user- and system-wide installations of pip out-of-sync. It should be noted, however, that pip can only be updated using APT, as updating via pip itself risks breaking the package. It might be wise to implement a big warning upon is

[Bug 1797460] Re: Ubuntu 16 pip stops with ImportError for request-Modul Edit

2018-10-11 Thread Andrius Merkys
Could you please provide steps a MWE to reproduce this bug? -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1797460 Title: Ubuntu 16 pip stops with ImportError for request-Modul Edit To manage notifi

[Bug 1797460] Re: Ubuntu 16 pip stops with ImportError for request-Modul Edit

2018-10-12 Thread Andrius Merkys
A Minimal Working Example. In other words, could you please provide steps how to reproduce this bug? -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1797460 Title: Ubuntu 16 pip stops with ImportError

[Bug 1772746] Re: After upgrade to 18.04, all pip and pip3 commands fail

2018-10-18 Thread Andrius Merkys
There are movements on the Debian side to update to v18. The packaging is complicated, I did what I could to push it, however I got stuck at some point with debundling and turned to package maintainers for help. -- You received this bug notification because you are a member of Ubuntu Bugs, which

Re: [Bug 1792386] Re: cod-tools: debian unstable has newer version of the package

2019-09-10 Thread Andrius Merkys
On 2019-09-10 18:38, Graham Inggs wrote: > cod-tools 2.2+dfsg-3 was sync'd into Ubuntu 19.04. > > For future reference, this can be done using the requestsync tool, see: > https://wiki.ubuntu.com/SyncRequestProcess Thanks for letting me know! Best, Andrius -- Andrius Merkys V

[Bug 1894094] [NEW] withhold the package until a stable release

2020-09-03 Thread Andrius Merkys
Public bug reported: The upstream expressed their concern that packaging development version of OpenMM (7.4.0.491.gac5a8f71+dfsg-1) may cause trouble with its users [1]. Therefore it has been agreed to withhold the package until the next stable release. The package has been removed from Debian tes

[Bug 1894094] Re: withhold the package until a stable release

2020-09-10 Thread Andrius Merkys
Thanks a lot for prompt reaction. -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1894094 Title: withhold the package until a stable release To manage notifications about this bug go to: https://bugs

[Bug 1965145] [NEW] CMake definitions (.cmake files) are missing

2022-03-16 Thread Andrius Merkys
Public bug reported: libantlr4-runtime-dev does not provide CMake definitions (.cmake files), although it could if antlr4-cpp-runtime was built with ANTLR4_INSTALL=ON. I have turned this option on in Debian in 4.9+dfsg-2 and Ubuntu will probably soon pick it up for the future releases. However, it

[Bug 1966683] [NEW] Rebuild with libmbedtls12/2.16.4 on focal

2022-03-28 Thread Andrius Merkys
Public bug reported: ncbi-blast+ remote executions throw ugly 'Critical' warnings on focal amd64: $ blastn -query test.fa -db nt -remote Critical: [blastn] External MBEDTLS version mismatch: 2.16.2 headers vs. 2.16.3 runtime [rest of the response trimmed] where test.fa is any DNA FASTA file, f

[Bug 1954379] [NEW] Please do not ship liboqs in stable releases

2021-12-09 Thread Andrius Merkys
Public bug reported: The authors of liboqs have explicitly asked to withhold distribution of liboqs binary packages until the NIST Post-Quantum Cryptography standardization project reaches its conclusion. Please block liboqs binary packages from being shipped with stable Ubuntu releases. I am the

[Bug 1970939] [NEW] rickslab-gpu-utils/3.6.0-2 does not contain icons

2022-04-29 Thread Andrius Merkys
Public bug reported: rickslab-gpu-utils/3.6.0-2 does not contain icons, thus its executables (for example, 'gpu-ls') output 'Error: Invalid icon path' errors. I have fixed the issue in Debian with this commit [1]. Please apply the cited commit on rickslab-gpu-utils in jammy. [1] https://salsa.deb

[Bug 280189] Re: wishlist: update libcdk-java to CDK 1.3.x

2022-04-12 Thread Andrius Merkys
Ubuntu 22.04 will have libcdk-java 2.7.1. Thus this bug should be closed. -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/280189 Title: wishlist: update libcdk-java to CDK 1.3.x To manage notificatio

[Bug 1965145] Re: CMake definitions (.cmake files) are missing

2022-04-12 Thread Andrius Merkys
Peter A. Jonsson reported that aforementioned patch (in bug description) is not enough to get the CMake definitions right. Thus one more patch is needed: https://salsa.debian.org/debian/antlr4-cpp- runtime/-/commit/c69aed95a4bc608a6a04d2850d353d1848b6b3ab. -- You received this bug notification be