Maybe you can try resizing that window using wmctrl.
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Wine window disappears when switching windows
https://bugs.launchpad.net/bugs/298157
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I run wine 1.2 (and Ubuntu 10.04) and are experiencing this situation with a
danish book-keeping application. When minimized I can see the application in
the taskbar, but when I unminimized (maximize is greyed out) the application it
seem to be very small and I can not get hold of it (or resize)
** Summary changed:
- wine window disappers on compiz effects
+ Wine window disappears when switching windows
** Changed in: compiz (Ubuntu)
Importance: Undecided => Low
** Changed in: compiz (Ubuntu)
Status: New => Triaged
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Wine window disappears when switching windows
https://bug