I've experienced the same issue even when the check is against my home folder.
Just noticed that using 'sudo' resolves the problem on my machine.
Using Xubuntu 14.04.5 LTS
Hope this will help.
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the same issue here
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https://bugs.launchpad.net/bugs/1143816
Title:
e4defrag option -c reports nothing but "done"
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Status changed to 'Confirmed' because the bug affects multiple users.
** Changed in: e2fsprogs (Ubuntu)
Status: New => Confirmed
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https://bugs.launchpad.net/bugs/1143816
Title:
** Summary changed:
- e4efrag option -c reports nothing but "done"
+ e4defrag option -c reports nothing but "done"
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https://bugs.launchpad.net/bugs/1143816
Title:
e4defrag option -c re
