I've confirmed that this also can occur for me without a reboot at all.
Logging out and logging in was enough.
Also the settings are modified on log in not on log out.
I confirmed this by checking the settings via the console prior to logging in
via lightdm.
These are the settings for me that ge
I'm have a clean install of 12.10 and have seen focus-mode and raise-on-click
reset during shutdown and restart.
I did an strace of the gsettings command to list those settings and it appears
to me that they are likely stored in the file:
~/.config/dconf/user
I checksummed that file prior t
