Re: [Tutor] Difflib comparing string sequnces

2010-03-10 Thread Vincent Davis
@Ricardo Aráoz Thanks for your response, Before I saw your response I had posted the question on stack overflow. See link below. I like your solution better than the re solution posted. It looks like this task may take longer than I think. The .re solution I guess might take more than 10 days. The

Re: [Tutor] Difflib comparing string sequnces

2010-03-10 Thread Ricardo Aráoz
Vincent Davis wrote: > I have never used the difflib or similar and have a few questions. > I am working with DNA sequences of length 25. I have a list of 230,000 > and need to look for each sequence in the entire genome (toxoplasma > parasite) I am not sure how large the genome is but more that 23

Re: [Tutor] Difflib comparing string sequnces

2010-03-10 Thread Ricardo Aráoz
Vincent Davis wrote: > I have never used the difflib or similar and have a few questions. > I am working with DNA sequences of length 25. I have a list of 230,000 > and need to look for each sequence in the entire genome (toxoplasma > parasite) I am not sure how large the genome is but more that 23