On 2011-10-05 21:29, Anna Olofsson wrote:
vcf file: 2 rows, 10 columns.
The important column is 7 where the ID is, i.e.
refseq.functionalClass=missense. It's a missense mutation, so then I
want to extract refseq.name=NM_003137492, or I want to extract only
the ID, which in this case is NM_003137
On 2011-10-06 05:46, lina wrote:
On Thu, Oct 6, 2011 at 4:33 AM, Prasad, Ramitwrote:
Dictionaries {} are containers for key/value based pairs like { key :
value, another_key : value(can be same or repeated) }
For example:
{'B': [0, 0, 0, 0, 0, 0], 'E': [2, 1, 4, 0, 1, 0]}
The keys here are
Hey all,
I'm sorry for such a silly question but I want to declare a blank integer for
x. What I have is a base for a program that I'm working on for fun. Yes, for
fun.
The long term goal is to create a way to log items that are currently being
done via pencil & paper and make this easier for
On Thu, Oct 6, 2011 at 2:01 AM, Alan Gauld wrote:
> On 05/10/11 13:46, lina wrote:
>
> another question, you know in linux, when use TAB, can automatically
>> input something,
>> so in python3, are there some way they can intelligent give some hints
>> or fill the left.
>>
>
> What development to
On Thu, Oct 6, 2011 at 4:33 AM, Prasad, Ramit wrote:
> >>yes, you're iterating over the keys of a dictionary. Since it only has
> the key "E", that's what you get. Try printing dir(results) to see what
> methods might return something other than the key. Make the language work
> for you.
>
> >S
On 10/5/2011 5:51 PM, Christopher King wrote:
There is a program that will open another program, write code at the
top of the program. The code at the top will cause the program to
print all strings afterwards in swap case.
Please provide a sample program that you wish to modify.
--
Bob Gail
I second the recommendation of PyCharm, it's the best Python IDE I've used.
Alan - OS X has Vim by default? At least, I've always used it and never
installed it, but I started from 10.5.
Regards,
Liam Clarke
On 30/09/2011, at 3:43 AM, Tom Tucker wrote:
>
> Another IDE to consider that suppo
There is a program that will open another program, write code at the top of
the program. The code at the top will cause the program to print all strings
afterwards in swap case.
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Hi,
I'm a beginner at Python and would really like some help in how to extract
information from a vcf file.
The attached file consists of a lot of information on mutations, this one
though is just 2 rows and 10 columns (the real one has a lot more rows).
I want to extract the mRNA ID only i
>>yes, you're iterating over the keys of a dictionary. Since it only has the
>>key "E", that's what you get. Try printing dir(results) to see what methods
>>might return something other than the key. Make the language work for you.
>Sorry I am not smart. value?
Dictionaries {} are container
On Wed, Oct 5, 2011 at 1:12 PM, Mina Nozar wrote:
>
> If there is a more graceful way of doing this, please let me know as well.
> I am new to python...
>
I just glanced through your email, but my initial thought would be to just
use regex to collect the entire segment that you're looking for
Hi everyone,
I am post processing data from the output of simulation of activities for various radionuclide produced in a reaction at
different times.
I have already combined the information from 13 files (containing calculated activities and errors for 13 different
times). The format of thi
On 04/10/11 21:00, Anna Olofsson wrote:
The table looks something like this, but with many more columns and rows:
# chr Pos ID REF ALT . . . . . . . . . . .
1 13645 - C T
. . . . .
I want to extract certain data from this table above and make it to a
sentence looking something like this: chr1:
On 05/10/11 13:46, lina wrote:
another question, you know in linux, when use TAB, can automatically
input something,
so in python3, are there some way they can intelligent give some hints
or fill the left.
What development tool are you using?
If you use IDLE, the standard IDE that comes with P
> I ask again. What did results look like when you print it out. I'm
> referring to the argument to writeonefiledata().
>
>> def writeonefiledata(outname,**results):
>>
> put the lines here:
>print ("results is: ", results)
>print("repr is:", repr(results))
$ python3 c
On Wed, Oct 5, 2011 at 8:18 AM, Dave Angel wrote:
> Anyway, you can slow it down drastically by alternating bubble passes with
> random passes, where in each case a random pair is swapped if they're out of
> order.
>
You can also slow it down by adding a time.sleep(1) (sleeps for 1 second).
Use
On 10/4/2011 4:00 PM, Anna Olofsson wrote:
Hi,
I'm a beginner at Python and I'm trying to extract some information
from a textfile where I have a lot of data.
The table looks something like this, but with many more columns and rows:
# chr Pos ID REFALT . . . . . . .
On 10/05/2011 08:46 AM, lina wrote:
On Wed, Oct 5, 2011 at 8:21 PM, Dave Angel wrote:
#these two are capitalized because they're intended to be constant
TOKENS = "BE"
LINESTOSKIP = 43
INFILEEXT = ".xpm"
OUTFILEEXT = ".txt"
def dofiles(topdirectory):
for filename in os.listdr(topdirector
On 10/05/2011 07:58 AM, R. Alan Monroe wrote:
Since all the moves are swaps, it'll be guaranteed to be in a sequence
that converges on the correct final order. Will it be the minimum
number of moves? Definitely not. But that wasn't a requirement, and if
it were, you wouldn't start by building t
On Wed, Oct 5, 2011 at 8:21 PM, Dave Angel wrote:
>
>
>>
>>> #these two are capitalized because they're intended to be constant
>>> TOKENS = "BE"
>>> LINESTOSKIP = 43
>>> INFILEEXT = ".xpm"
>>> OUTFILEEXT = ".txt"
>>>
>>> def dofiles(topdirectory):
>>>for filename in os.listdr(topdirectory):
On 10/05/2011 02:51 AM, lina wrote:
On Wed, Oct 5, 2011 at 1:42 PM, Dave Angel wrote:
On 10/04/2011 11:13 PM, lina wrote:
On Wed, Oct 5, 2011 at 10:45 AM, Dave Angel wrote:
On 10/04/2011 10:22 PM, lina wrote:
On Wed, Oct 5, 2011 at 1:30 AM, Prasad, Ramit
*com
w
SyntaxError: inva
> Since all the moves are swaps, it'll be guaranteed to be in a sequence
> that converges on the correct final order. Will it be the minimum
> number of moves? Definitely not. But that wasn't a requirement, and if
> it were, you wouldn't start by building that list of tuples.
I did get a sem
On 2011/10/05 09:32 AM, Nikunj Badjatya wrote:
Howdy All,
To give an overview of the problem,
I have an installer. It is used to install virtual machines at
specific location.
The installer is written in Powershell and Python. The topmost script
is in
Python ( install.py ) which internally ca
You can run .py files from powershell, just like you would run any other
command - 'python myfile.py'
I don't have any experience of the logging modules, but what I do when using
multiple languages is have them all write to the same plain text log file and
just prepend [] to the beginning of ea
Howdy All,
To give an overview of the problem,
I have an installer. It is used to install virtual machines at specific
location.
The installer is written in Powershell and Python. The topmost script is in
Python ( install.py ) which internally calls other .py and .PS1 ( powershell
) scripts using
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