Hi Danny,
Thanks for your reply. I have been using BioPython
for long time. I found their BLAST parser buggy
(IMPO), otherwise BioPython has more cool modules.
In my case Parser did not iterate over hits and it
turned out difficult for me to look into it in detail.
Also, I wanted to work more
On Fri, 31 Dec 2004, kumar s wrote:
> I am trying to parse BLAST output (Basic Local Alignment Search Tool,
> size around more than 250 KB ).
[xml text cut]
Hi Kumar,
Just as a side note: have you looked at Biopython yet?
http://biopython.org/
I mention this because Biopython comes wit
David Holland wrote:
Apologies,
I did not see that Kent had already answered this !
Thanks Kent I put that encoding and it works fine.
Although surprisingly the other idea :-
write the string with '\xc2' did not work.
Well I was guessing so I am happy that one of the guesses was correct. What happ
Jacob S. said unto the world upon 2004-12-27 16:31:
I hate to sound weird...
But who are you all, what are you're ages, what do you do, marriage
status, etc? You obviously don't have to answer, I'm just curious who
I'm boldly sending emails to.
Jacob Schmidt
P.S. I'm a student. 14 years. Play the p
Forwarded to the list...
> On Thu, 30 Dec 2004 22:58:14 -0800, Patric Michael <[EMAIL PROTECTED]>
> wrote: > > First off, make sure that you have the "Content-Type:
> text/html\n\n" > line print before anything else whenever you send
> output to the web. > Presumably it worked for the form display
Dear group:
I am trying to parse BLAST output (Basic Local
Alignment Search Tool, size around more than 250 KB
).
-
1
gi|43442325|emb|BX956931.1|
DKFZp781D1095_r1 781 (synonym: hlcc4) Homo
sapiens cDNA clone DKFZp781D1095 5', mRNA
sequence.
BX956931
693
-
-
1
1164.13
58
Dear group:
I am trying to parse BLAST output (Basic Local
Alignment Search Tool, size around more than 250 KB
).
-
1
gi|43442325|emb|BX956931.1|
DKFZp781D1095_r1 781 (synonym: hlcc4) Homo
sapiens cDNA clone DKFZp781D1095 5', mRNA
sequence.
BX956931
693
-
-
1
1164.13
58
Apologies,
I did not see that Kent had already answered this !
Thanks Kent I put that encoding and it works fine.
Although surprisingly the other idea :-
write the string with '\xc2' did not work.
--- David Holland <[EMAIL PROTECTED]> wrote:
> Date: Fri, 31 Dec 2004 16:28:59 + (GMT)
> From:
I ran a program with a "£" sign, and I got this
message :-
"sys:1: DeprecationWarning: Non-ASCII character '\xc2'
in file birdgame32a.py on line 93, but no encoding
declared; see http://www.python.org/peps/pep-0263.html
for details'
I looked at the message but I am not sure what
encoding to use fo
I am 31 married, living in London UK.
I can play guitar but I am not that good.
I work in IT as Oracle support but the only languages
I know apart from basic python is basic PL/SQL and of
course SQL. Of course I know how to use various
Oracle applications.
I studied Chemistry but sadly there were
> * Jacob S. <[EMAIL PROTECTED]> [041228 01:42]:
> > But who are you all, what are you're ages, what do you do, marriage status,
> > etc?
37, no kids but a girlfriend with a cat. I work at a clinical laboratory in a
hospital in germany.
I'm just a hobby programmer and started with python about 2
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