Dear Mike and Jan,
Thank you for your suggestions. Mike, your script was close to what I had
in mind, though way more elegant. So I appreciate it!
Also Jan, thank you for pointing out snakemake. Apparently people do use it
with Slurm, so I'm looking into it. Probably overkill at this point for
mo
Snakemake is a tool to manage job dependencies. I don't have experience
using this in a slurm context, but I have used Snakemake to manage
complex depencies in workflows in other contexts. Snakemake should
support slurm.
HTH,
Jan
On 02-03-2021 20:16, Jason Simms wrote:
Hello all,
I am r
There may be prettier ways, but this gets the job done. Captures the output
from each sbatch command to get a job ID, colon separates the ones in the
second group, and removes the trailing colon before submitting the last job:
#!/bin/bash
JOB1=$(sbatch job1.sh | awk '{print $NF}')
echo "Submitt
