Re: [slurm-users] unable to kill namd3 process

2023-05-03 Thread Shaghuf Rahman
Hi, For an update we tried one case please find it below: We tried by adding below script to kill the namd3 process in our epilog script. # To kill remaining processes of job. # if [ $SLURM_UID = 1234 ] ; then STUCK_PID=`${SLURM_BIN}scontrol listpids $SLURM_JOB_ID | awk '{print $1}' | gr

Re: [slurm-users] unable to kill namd3 process

2023-04-25 Thread Shaghuf Rahman
Hi, Also forgot to mention the process is still running when user do scancel and epilog does not clean if one job finished when doing multiple job submission. We tried to use unkillable option but did not work. The process still remains the same until killing it manually. On Tue, 25 Apr 2023 at

[slurm-users] unable to kill namd3 process

2023-04-25 Thread Shaghuf Rahman
Hi, We are facing one issue in my environment and the behaviour looks strange to me. It is specifically associated with the namd3 application. The issue is narrated below and I have made some of the cases. I am trying to understand the way to kill the processes of the namd3 application submitted